mRNA_Ecto-sp8_S_contig101714.286.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101714.286.1
Unique NamemRNA_Ecto-sp8_S_contig101714.286.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.680e-37
Identity = 69/75 (92.00%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    4 THHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 228
            TH      DIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct:   64 THERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.590e-35
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    4 THHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 228
            TH      DIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct:  171 THERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 4.370e-9
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   34 FGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 216
            +GDI LGLYLVRGDA+VL+GE+D+   E   LRRVSADEI+E ++E  +     A+ DW F
Sbjct:   58 YGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESR----ARDDWDF 113
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BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.230e-8
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRL-RRVSADEIIEAQQEASAEERQDAKLDWLF 216
             TH       IFGDI LGLY+VRGD +VL+GE+DE +E + +  RRVSA+EI+ AQ+  + E++   K+ W F
Sbjct:   46 NTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQR--NTEDK--TKVAWDF 114
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A0P4X083_SCYOL (U6 snRNA-associated Sm-like protein LSm1 n=6 Tax=Pleocyemata TaxID=6692 RepID=A0A0P4X083_SCYOL)

HSP 1 Score: 56.6 bits (135), Expect = 2.370e-8
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQ 165
            RT   +   + +GDI  G++++RG+ +VL+GE+DET+EE  RL  VS +EI+EAQ
Sbjct:   45 RTIERIHVGNRYGDIERGVFVIRGENVVLLGEIDETKEENDRLENVSIEEILEAQ 99
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A8J4YBF0_CHIOP (U6 snRNA-associated Sm-like protein LSm1 n=3 Tax=Heterotremata TaxID=116706 RepID=A0A8J4YBF0_CHIOP)

HSP 1 Score: 57.0 bits (136), Expect = 3.360e-8
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQ 165
            RT   +   + +GDI  G++++RG+ +VL+GE+DET+EE+ RL  VS +EI+EAQ
Sbjct:   85 RTIERIHVGNRYGDIERGVFVIRGENVVLLGEIDETKEESDRLENVSIEEILEAQ 139
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A7RYM0_NEMVE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RYM0_NEMVE)

HSP 1 Score: 55.8 bits (133), Expect = 5.080e-8
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQ--QEASAEERQDAKL 204
             T   +   D +GDI  G++LVRG+ LVL+GE+D+ +E   +L+ VS DEI+EAQ  ++ + EE + AK+
Sbjct:   45 ETIERIYVGDRYGDIPRGIFLVRGENLVLLGEIDQDKEVQSKLQEVSVDEILEAQRAEQIAKEEEEKAKV 114
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: UPI00077A0EC4 (U6 snRNA-associated Sm-like protein LSm1 isoform X2 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A0EC4)

HSP 1 Score: 55.8 bits (133), Expect = 5.080e-8
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   34 FGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKL 204
            +GDI  G++LVRG+ +VLMGE+DE +E   +L+ VS  EI+EAQ+E    + ++ K+
Sbjct:   56 YGDIPRGIFLVRGENMVLMGEIDEEKEANSKLKEVSVQEILEAQREEQVAKEEEEKV 112
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A2L2Y8L0_PARTP (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Y8L0_PARTP)

HSP 1 Score: 55.5 bits (132), Expect = 6.510e-8
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQ 165
            RT   +     FG+I+LG+++VRGD +VL+GE+D+ ++ T +L RVS +EI+EAQ
Sbjct:   45 RTVERIHVGKKFGEIALGVFIVRGDNVVLLGEVDDNKDSTSKLIRVSQEEILEAQ 99
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A8K1FQE7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQE7_PYTOL)

HSP 1 Score: 55.5 bits (132), Expect = 6.510e-8
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   22 AADIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 216
            A  +F DI LGL ++RGD +VL+GELDE +E + P ++R S +E++EA++  +A+     +  W F
Sbjct:   63 AGGLFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASMEEVLEAEERLNADGASSVREQWGF 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL00_ECTSI4.680e-3792.00U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A6H5JKJ0_9PHAE2.590e-3590.67U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A6V1WH12_HETAK4.370e-955.74U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
A0A7S2XVC4_9STRA1.230e-847.95U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
A0A0P4X083_SCYOL2.370e-847.27U6 snRNA-associated Sm-like protein LSm1 n=6 Tax=P... [more]
A0A8J4YBF0_CHIOP3.360e-847.27U6 snRNA-associated Sm-like protein LSm1 n=3 Tax=H... [more]
A7RYM0_NEMVE5.080e-842.86U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=N... [more]
UPI00077A0EC45.080e-845.61U6 snRNA-associated Sm-like protein LSm1 isoform X... [more]
A0A2L2Y8L0_PARTP6.510e-847.27U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
A0A8K1FQE7_PYTOL6.510e-840.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101714contigEcto-sp8_S_contig101714:291..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score132.1
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog2880.D8LL00
Preferred nameLSM1
Model size231
KEGG koko:K03952,ko:K12620,ko:K14794,ko:K16931
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko03018,ko04714,ko04723,ko04913,ko04925,ko04927,ko04932,ko04934,ko04979,ko05010,ko05012,ko05016,map00190,map01100,map03018,map04714,map04723,map04913,map04925,map04927,map04932,map04934,map04979,map05010,map05012,map05016
KEGG ModuleM00146,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000290,GO:0000291,GO:0000339,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009631,GO:0009651,GO:0009892,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0010721,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019827,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030424,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033962,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036002,GO:0036464,GO:0036477,GO:0042221,GO:0042538,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0070925,GO:0071044,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098727,GO:0120025,GO:0120038,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990124,GO:1990726,GO:1990904,GO:2000026
Exons1
EggNOG free text desc.deadenylation-dependent decapping of nuclear-transcribed mRNA
EggNOG OGsKOG1782@1,KOG1782@2759
Cds size231
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143115.207337-CDS-Ecto-sp8_S_contig101714:290..5211681143115.207337-CDS-Ecto-sp8_S_contig101714:290..521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101714 291..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101714.286.1prot_Ecto-sp8_S_contig101714.286.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101714 291..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101714.286.1

>prot_Ecto-sp8_S_contig101714.286.1 ID=prot_Ecto-sp8_S_contig101714.286.1|Name=mRNA_Ecto-sp8_S_contig101714.286.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=77bp
RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADE
IIEAQQEASAEERQDAKLDWLFQDLS*
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mRNA from alignment at Ecto-sp8_S_contig101714:291..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101714.286.1 ID=mRNA_Ecto-sp8_S_contig101714.286.1|Name=mRNA_Ecto-sp8_S_contig101714.286.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=231bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101714:291..521- (Ectocarpus species8 EcLAC_412)
CGTACCCACCACCCGGTTGGTGCCGCAGATATTTTCGGGGATATATCGCT
GGGGCTTTACCTTGTCCGAGGGGATGCTCTGGTGTTGATGGGGGAACTCG
ACGAGACCCGGGAGGAAACTCCCAGGCTGAGAAGGGTCTCCGCGGACGAG
ATAATCGAGGCGCAGCAGGAGGCATCGGCAGAGGAGCGCCAAGACGCGAA
GCTAGACTGGTTGTTCCAGGACTTGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101714:291..521-

>mRNA_Ecto-sp8_S_contig101714.286.1 ID=mRNA_Ecto-sp8_S_contig101714.286.1|Name=mRNA_Ecto-sp8_S_contig101714.286.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101714:291..521- (Ectocarpus species8 EcLAC_412)
CGTACCCACCACCCGGTTGGTGCCGCAGATATTTTCGGGGATATATCGCT
GGGGCTTTACCTTGTCCGAGGGGATGCTCTGGTGTTGATGGGGGAACTCG
ACGAGACCCGGGAGGAAACTCCCAGGCTGAGAAGGGTCTCCGCGGACGAG
ATAATCGAGGCGCAGCAGGAGGCATCGGCAGAGGAGCGCCAAGACGCGAA
GCTAGACTGGTTGTTCCAGGACTTGTCGTGA
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