prot_Ecto-sp8_S_contig101714.286.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig101714.286.1
Unique Nameprot_Ecto-sp8_S_contig101714.286.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length77
Homology
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.680e-37
Identity = 69/75 (92.00%), Postives = 69/75 (92.00%), Query Frame = 0
Query:    2 THHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 76
            TH      DIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct:   64 THERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.590e-35
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0
Query:    2 THHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 76
            TH      DIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct:  171 THERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 4.370e-9
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0
Query:   12 FGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 72
            +GDI LGLYLVRGDA+VL+GE+D+   E   LRRVSADEI+E ++E  +     A+ DW F
Sbjct:   58 YGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESR----ARDDWDF 113          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.230e-8
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 0
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRL-RRVSADEIIEAQQEASAEERQDAKLDWLF 72
             TH       IFGDI LGLY+VRGD +VL+GE+DE +E + +  RRVSA+EI+ AQ+  + E++   K+ W F
Sbjct:   46 NTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQR--NTEDK--TKVAWDF 114          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A0P4X083_SCYOL (U6 snRNA-associated Sm-like protein LSm1 n=6 Tax=Pleocyemata TaxID=6692 RepID=A0A0P4X083_SCYOL)

HSP 1 Score: 56.6 bits (135), Expect = 2.370e-8
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQ 55
            RT   +   + +GDI  G++++RG+ +VL+GE+DET+EE  RL  VS +EI+EAQ
Sbjct:   45 RTIERIHVGNRYGDIERGVFVIRGENVVLLGEIDETKEENDRLENVSIEEILEAQ 99          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A8J4YBF0_CHIOP (U6 snRNA-associated Sm-like protein LSm1 n=3 Tax=Heterotremata TaxID=116706 RepID=A0A8J4YBF0_CHIOP)

HSP 1 Score: 57.0 bits (136), Expect = 3.360e-8
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQ 55
            RT   +   + +GDI  G++++RG+ +VL+GE+DET+EE+ RL  VS +EI+EAQ
Sbjct:   85 RTIERIHVGNRYGDIERGVFVIRGENVVLLGEIDETKEESDRLENVSIEEILEAQ 139          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A7RYM0_NEMVE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RYM0_NEMVE)

HSP 1 Score: 55.8 bits (133), Expect = 5.080e-8
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 0
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQ--QEASAEERQDAKL 68
             T   +   D +GDI  G++LVRG+ LVL+GE+D+ +E   +L+ VS DEI+EAQ  ++ + EE + AK+
Sbjct:   45 ETIERIYVGDRYGDIPRGIFLVRGENLVLLGEIDQDKEVQSKLQEVSVDEILEAQRAEQIAKEEEEKAKV 114          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: UPI00077A0EC4 (U6 snRNA-associated Sm-like protein LSm1 isoform X2 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A0EC4)

HSP 1 Score: 55.8 bits (133), Expect = 5.080e-8
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   12 FGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKL 68
            +GDI  G++LVRG+ +VLMGE+DE +E   +L+ VS  EI+EAQ+E    + ++ K+
Sbjct:   56 YGDIPRGIFLVRGENMVLMGEIDEEKEANSKLKEVSVQEILEAQREEQVAKEEEEKV 112          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A2L2Y8L0_PARTP (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Y8L0_PARTP)

HSP 1 Score: 55.5 bits (132), Expect = 6.510e-8
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    1 RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQ 55
            RT   +     FG+I+LG+++VRGD +VL+GE+D+ ++ T +L RVS +EI+EAQ
Sbjct:   45 RTVERIHVGKKFGEIALGVFIVRGDNVVLLGEVDDNKDSTSKLIRVSQEEILEAQ 99          
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Match: A0A8K1FQE7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQE7_PYTOL)

HSP 1 Score: 55.5 bits (132), Expect = 6.510e-8
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    8 AADIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 72
            A  +F DI LGL ++RGD +VL+GELDE +E + P ++R S +E++EA++  +A+     +  W F
Sbjct:   63 AGGLFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASMEEVLEAEERLNADGASSVREQWGF 128          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101714.286.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL00_ECTSI4.680e-3792.00U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A6H5JKJ0_9PHAE2.590e-3590.67U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A6V1WH12_HETAK4.370e-955.74U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
A0A7S2XVC4_9STRA1.230e-847.95U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
A0A0P4X083_SCYOL2.370e-847.27U6 snRNA-associated Sm-like protein LSm1 n=6 Tax=P... [more]
A0A8J4YBF0_CHIOP3.360e-847.27U6 snRNA-associated Sm-like protein LSm1 n=3 Tax=H... [more]
A7RYM0_NEMVE5.080e-842.86U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=N... [more]
UPI00077A0EC45.080e-845.61U6 snRNA-associated Sm-like protein LSm1 isoform X... [more]
A0A2L2Y8L0_PARTP6.510e-847.27U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
A0A8K1FQE7_PYTOL6.510e-840.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 2..71
e-value: 5.0E-10
score: 41.2
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 8..66
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 8..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101714contigEcto-sp8_S_contig101714:291..521 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101714.286.1mRNA_Ecto-sp8_S_contig101714.286.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig101714 291..521 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig101714.286.1 ID=prot_Ecto-sp8_S_contig101714.286.1|Name=mRNA_Ecto-sp8_S_contig101714.286.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=77bp
RTHHPVGAADIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADE
IIEAQQEASAEERQDAKLDWLFQDLS*
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