mRNA_Ecto-sp8_S_contig11577.1929.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11577.1929.1
Unique NamemRNA_Ecto-sp8_S_contig11577.1929.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11577.1929.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.330e-14
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:  643 TESVRSVGSAAPAATVEPSATADPLPGIGTPEPSVTGTAGGGTSVAP 783
            TESVRS+GSAAPAATVEPSATADPLPGIGTPEPSVTGTAGGGTSVAP
Sbjct:  538 TESVRSIGSAAPAATVEPSATADPLPGIGTPEPSVTGTAGGGTSVAP 584
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BLAST of mRNA_Ecto-sp8_S_contig11577.1929.1 vs. uniprot
Match: A0A6H5JU12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU12_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.660e-13
Identity = 51/86 (59.30%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  448 GIATPGPIGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPTTVAPSAGPPSGVVVGTPGPTESVRSVGSAAPAATVEPSAT 705
            GIATPGPIGLD                               LSPTTVAPSAGPPSGVVVGTPGPTES R VGS APAATV PSAT
Sbjct:  429 GIATPGPIGLDTPNPSVAPAPTSTSTAPQMIPTQPPTPTAAPLSPTTVAPSAGPPSGVVVGTPGPTESARGVGSVAPAATVGPSAT 514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11577.1929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIK9_ECTSI2.330e-1497.87Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
A0A6H5JU12_9PHAE2.660e-1359.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11577contigEcto-sp8_S_contig11577:61..1532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.9
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog2880.D8LIK9
Model size786
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
Cds size783
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143226.713253-CDS-Ecto-sp8_S_contig11577:60..3841681143226.713253-CDS-Ecto-sp8_S_contig11577:60..384Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11577 61..384 +
1681143226.721993-CDS-Ecto-sp8_S_contig11577:1071..15301681143226.721993-CDS-Ecto-sp8_S_contig11577:1071..1530Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11577 1072..1530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11577.1929.1prot_Ecto-sp8_S_contig11577.1929.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11577 61..1530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11577.1929.1

>prot_Ecto-sp8_S_contig11577.1929.1 ID=prot_Ecto-sp8_S_contig11577.1929.1|Name=mRNA_Ecto-sp8_S_contig11577.1929.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=261bp
VTTPPAATTPAPATVTPTVVTVPPVTAEPTTTPPVTTPPVATTPAPATVT
PTVVTVPPVTAEPTTTLPMTTPPVATTPAPATVTPTAVTVPPATAAPMIP
PSTAPATETPAPAPAEVVTIPPTVSAPSPITTPPAISTPQPGVGTLPPAG
IATPGPIGLDTPNPSVAPAPTSTSTAPQMIPTQPPSPSAAPLSPTTVAPS
AGPPSGVVVGTPGPTESVRSVGSAAPAATVEPSATADPLPGIGTPEPSVT
GTAGGGTSVAP
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mRNA from alignment at Ecto-sp8_S_contig11577:61..1532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11577.1929.1 ID=mRNA_Ecto-sp8_S_contig11577.1929.1|Name=mRNA_Ecto-sp8_S_contig11577.1929.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1472bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11577:61..1532+ (Ectocarpus species8 EcLAC_412)
GTGACGACGCCCCCTGCCGCTACCACACCTGCACCTGCAACGGTCACCCC
AACCGTCGTCACTGTGCCGCCGGTGACAGCTGAGCCCACTACGACCCCCC
CTGTGACGACGCCCCCTGTCGCTACCACACCTGCACCTGCAACGGTCACC
CCAACCGTCGTCACTGTGCCGCCGGTGACTGCTGAGCCCACTACGACCCT
CCCTATGACGACGCCCCCTGTCGCTACCACACCTGCACCTGCAACGGTCA
CCCCAACCGCCGTCACTGTGCCGCCGGCGACTGCTGCGCCCATGATCCCG
CCCTCGACGGCGCCTGCTACGGAGGTGAGTGCTGCCTTACCGCCAACTAC
GGGTGTGCCGGTAGAGCCGCCCGCGATGGTAAAGGCCAGAGGGTTTGCAC
GATTGTAAGGCTTTCGTGGTTGCACAAACCAGCGCAGGTGTTTGACGGGG
CTGAACGAGCTTCGCTCCCTCCCCCCCCGCCCCCGCCAGAGAGCGCGGCC
GGCGGTGTTTGCGGAACGGCCGTGATTATTTTTTTGCAGTGTGGGGAGAA
GCGTCGCAATGCTCAATGTTCACGGCAGCTTCACGATCTAGAGGCCGTAG
TGCCCTGAGTGAGTAGAACGCACGGCTAAAAGCTGGAAATTTATACTAAA
AAAACGAGGTGTCACGCGGGAGTGTTTGTGCGCGTACGTCCGAAACATTA
GTTCGGACCTTGGCTATCGCGAGACCCTGCTGGTCCATCGGACGTCTTGT
AGCAGCAGCCGCAGCAGCAGCTTCCAACTGTCACACACACATCACACACA
CCACCACCACCAGCGGTTCTAATATCTCGAGACGACGTTTTCGTGGCCTG
CAAGCCATCCTGAACTGTTGTAGATGAAGCGCAAGAGCTCGTCTCCGCAG
AGCGAACGCTTTTGTGACTTCTTGCGCGCCGCAGTTGTTGATCGCCCCCC
CCCCCCCACCCCCGTGTTTCTTTGCCGTCTTTTCCCGCCTCATGCGGCAA
AAACATTCCAGACCCCTGCCCCGGCGCCCGCGGAGGTGGTAACAATCCCC
CCCACGGTATCCGCGCCGTCTCCGATAACGACCCCTCCTGCGATCTCTAC
TCCACAACCGGGCGTCGGCACCCTGCCGCCAGCAGGTATTGCGACCCCCG
GACCCATTGGTCTGGACACCCCCAACCCGTCAGTAGCCCCCGCGCCCACC
TCGACTTCCACGGCCCCGCAGATGATTCCCACGCAGCCCCCCTCACCATC
CGCGGCGCCCCTCTCCCCTACTACTGTTGCACCTTCTGCCGGCCCCCCTT
CCGGGGTGGTAGTCGGAACTCCGGGGCCGACCGAATCGGTACGGAGTGTC
GGCTCCGCGGCGCCTGCTGCGACCGTAGAACCGTCGGCTACCGCCGACCC
CCTCCCGGGGATAGGAACGCCCGAGCCGAGTGTGACCGGGACAGCAGGAG
GCGGCACCAGTGTGGCACCAGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11577:61..1532+

>mRNA_Ecto-sp8_S_contig11577.1929.1 ID=mRNA_Ecto-sp8_S_contig11577.1929.1|Name=mRNA_Ecto-sp8_S_contig11577.1929.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11577:61..1532+ (Ectocarpus species8 EcLAC_412)
GTGACGACGCCCCCTGCCGCTACCACACCTGCACCTGCAACGGTCACCCC
AACCGTCGTCACTGTGCCGCCGGTGACAGCTGAGCCCACTACGACCCCCC
CTGTGACGACGCCCCCTGTCGCTACCACACCTGCACCTGCAACGGTCACC
CCAACCGTCGTCACTGTGCCGCCGGTGACTGCTGAGCCCACTACGACCCT
CCCTATGACGACGCCCCCTGTCGCTACCACACCTGCACCTGCAACGGTCA
CCCCAACCGCCGTCACTGTGCCGCCGGCGACTGCTGCGCCCATGATCCCG
CCCTCGACGGCGCCTGCTACGGAGACCCCTGCCCCGGCGCCCGCGGAGGT
GGTAACAATCCCCCCCACGGTATCCGCGCCGTCTCCGATAACGACCCCTC
CTGCGATCTCTACTCCACAACCGGGCGTCGGCACCCTGCCGCCAGCAGGT
ATTGCGACCCCCGGACCCATTGGTCTGGACACCCCCAACCCGTCAGTAGC
CCCCGCGCCCACCTCGACTTCCACGGCCCCGCAGATGATTCCCACGCAGC
CCCCCTCACCATCCGCGGCGCCCCTCTCCCCTACTACTGTTGCACCTTCT
GCCGGCCCCCCTTCCGGGGTGGTAGTCGGAACTCCGGGGCCGACCGAATC
GGTACGGAGTGTCGGCTCCGCGGCGCCTGCTGCGACCGTAGAACCGTCGG
CTACCGCCGACCCCCTCCCGGGGATAGGAACGCCCGAGCCGAGTGTGACC
GGGACAGCAGGAGGCGGCACCAGTGTGGCACCA
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