prot_Ecto-sp8_S_contig11275.1639.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp8_S_contig11275.1639.1
Unique Name	prot_Ecto-sp8_S_contig11275.1639.1
Type	polypeptide
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length	284

Homology

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 463 bits (1191), Expect = 3.570e-157
Identity = 274/278 (98.56%), Postives = 277/278 (99.64%), Query Frame = 0

Query:    1 IQVGRPLNTESGVAGGIEGMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQDQSKPALSVLPPGLSAAGAAXXXXXXXXXXXXXXXXXXXXXXXXXRLTAASRLQGLGNGGVANNGSNGGVGVVGGFAGRMQGGGVGGATGVPGVSRCMCLVNMLGPEDADDEDTKAEILEEFGTCGTVLQV 278
            I+VGRPLNT+SGVAGGIEGMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQDQSKPALSVLPPGLSAAGAAXXXXXXXXXXXXXXXXXXXXXXXXXRLTAASRLQGLGNGGVANNGSNGGVGVVGG AGRMQGGGVGGATGVPGVSRCMCLVNMLGPEDADDEDTKAEILEEFGTCGTVLQ+
Sbjct:  358 IKVGRPLNTDSGVAGGIEGMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQDQSKPALSVLPPGLSAAGAAXXXXXXXXXXXXXXXXXXXXXXXXXRLTAASRLQGLGNGGVANNGSNGGVGVVGGSAGRMQGGGVGGATGVPGVSRCMCLVNMLGPEDADDEDTKAEILEEFGTCGTVLQL 635

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: A0A7S2SQ65_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ65_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.090e-17
Identity = 68/210 (32.38%), Postives = 102/210 (48.57%), Query Frame = 0

Query:   70 KIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQDQSKPALSVLPPGLSAAGAAXXXXXXXXXXXXXXXXXXXXXXXXXRLTAASRLQGLGNGGVANNGSNGGVGVVGGFAGRMQGGGVGGATGVPGVSRCMCLVNMLGPEDA-DDEDTKAEILEEFGTCGTVLQV 278
            +++VGN+   +T++ +KTVFEPFG ++  +++QDPS    H+G+GFI YA +  A+  +  M+ FEL G+ +RV WA   +         G    GAA                    XXXXX              G A  G+ G +G  G  A  +       +T  PGVS+C+ + NM+  ++A +D D + EI EE    G V QV
Sbjct:   26 RVFVGNIAQELTSDTLKTVFEPFGDIIDCQIMQDPSGGPRHRGYGFISYALQQNAQDAVSQMNGFELLGKQVRVNWASGSA---------GNPTGGAATPNSVGGTPLLGLPGAAPAPXXXXXXXXXXXS-------GGAIPGAPGILGSAGAPAAAILA-----STATPGVSKCLLMTNMVSVKEAKEDPDLEGEIQEECSKHGAVKQV 214

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: UPI000F559718 (RNA-binding protein 39-like isoform X5 n=2 Tax=Pocilloporidae TaxID=46729 RepID=UPI000F559718)

HSP 1 Score: 77.8 bits (190), Expect = 1.710e-12
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 0

Query:   53 AEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRV 143
            AE+LKA       P  T++YVG++  +IT +MIK +FEPFG+V   +++ D S  G  KG+GF+Q+     AR  +D M+ FELAGR ++V
Sbjct:  234 AEKLKAP------PGPTRLYVGSLHFNITEQMIKAIFEPFGIVDSVQLIYD-SETGRSKGYGFLQFRDADAARQAMDQMNGFELAGRPMKV 317

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: A0A2B4ST54_STYPI (RNA-binding protein 39 n=9 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4ST54_STYPI)

HSP 1 Score: 77.8 bits (190), Expect = 1.750e-12
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 0

Query:   53 AEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRV 143
            AE+LKA       P  T++YVG++  +IT +MIK +FEPFG+V   +++ D S  G  KG+GF+Q+     AR  +D M+ FELAGR ++V
Sbjct:  250 AEKLKAP------PGPTRLYVGSLHFNITEQMIKAIFEPFGIVDSVQLIYD-SETGRSKGYGFLQFRDADAARQAMDQMNGFELAGRPMKV 333

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: A0A7R8W376_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W376_9CRUS)

HSP 1 Score: 71.2 bits (173), Expect = 2.570e-11
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 0

Query:   70 KIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQ---DQSKPALSV 156
            +IY+ +V   +T + IK+VFE FG +   E++ +PS PG H+GFGF++Y Q   A   + +M+  +L G+ LRV  A    D  + ALS+
Sbjct:   33 RIYIASVHQDLTEQDIKSVFEAFGKIKHCELIPNPSIPGKHRGFGFVEYEQTQAAEEAVASMNMLDLGGQFLRVGKASTPPDALQQALSI 122

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: A0A6S7HZJ6_PARCT (RNA-binding 39-like isoform X4 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7HZJ6_PARCT)

HSP 1 Score: 70.5 bits (171), Expect = 4.400e-10
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0

Query:   53 AEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRV 143
            AE+LK  +G T      +IYVG++  +IT +MIK +FEPFG++   +M+ D S  G  KG+ FIQ+     A+  ++ M+ FELAGR ++V
Sbjct:  227 AEKLKRPIGPT------RIYVGSLHFNITEQMIKAIFEPFGIIDTVQMIHD-SESGRSKGYCFIQFRDPDSAKRAMEQMNGFELAGRPIKV 310

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: UPI001F036398 (RNA-binding protein 39-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F036398)

HSP 1 Score: 70.5 bits (171), Expect = 4.820e-10
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 0

Query:   53 AEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRV 143
            AE+LK  +G T      ++YVG++  +IT +MIK +FEPFG++   +M+ D S  G  KG+ FIQ+     A+  ++ M+ FELAGR ++V
Sbjct:  223 AEKLKRPLGPT------RVYVGSLHFNITEQMIKAIFEPFGVIDTVQMIMD-SETGRSKGYCFIQFRDPDSAKRAMEQMNGFELAGRPIKV 306

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: A0A1C7NAH9_9FUNG (RNA-binding protein rsd1 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NAH9_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 6.600e-10
Identity = 35/93 (37.63%), Postives = 60/93 (64.52%), Query Frame = 0

Query:   51 VAAEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRV 143
            +A +  + AMG+   P+  ++YVG++   +T + ++ +FEPFG +    + +D +  G  KGFGFIQY   + A+T ++ M+ FELAGR+L+V
Sbjct:  245 LAMQAQRNAMGLMQEPSYQRLYVGSLHFSLTEDDVRQIFEPFGPLDFVNLHKD-TETGRSKGFGFIQYKNATDAKTALEKMNGFELAGRSLKV 336

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: A0A7J7JLC5_BUGNE (PUF60 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JLC5_BUGNE)

HSP 1 Score: 70.1 bits (170), Expect = 7.180e-10
Identity = 28/74 (37.84%), Postives = 46/74 (62.16%), Query Frame = 0

Query:   70 KIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRV 143
            +IY+ ++ P +    +K+VFE FG +   ++V +P+ PG HKG+GFI+Y     A   + +M+ F+L G  LRV
Sbjct:  252 RIYIASIHPDLVVNDVKSVFEAFGPIRACQLVPEPTRPGRHKGYGFIEYTNAQSAEDAVSSMNLFDLGGMFLRV 325

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BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Match: A0A6J8BFB3_MYTCO (PUF60 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BFB3_MYTCO)

HSP 1 Score: 69.3 bits (168), Expect = 8.530e-10
Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 0

Query:   70 KIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRV 143
            +IY+ ++   +T + IK+VFE FG ++  E+ +DP+ PG HK +GFI+Y     A+  + +M+ F+L G+ LRV
Sbjct:   20 RIYIASIHQDLTEDDIKSVFEAFGNILTCEICKDPTKPGKHKEYGFIEYDSSQAAQDAVASMNLFDLGGQYLRV 93

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig11275.1639.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWX1_ECTSI	3.570e-157	98.56	RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI...	[more]
A0A7S2SQ65_9STRA	4.090e-17	32.38	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
UPI000F559718	1.710e-12	43.96	RNA-binding protein 39-like isoform X5 n=2 Tax=Poc...	[more]
A0A2B4ST54_STYPI	1.750e-12	43.96	RNA-binding protein 39 n=9 Tax=Pocilloporidae TaxI...	[more]
A0A7R8W376_9CRUS	2.570e-11	38.89	Hypothetical protein n=1 Tax=Cyprideis torosa TaxI...	[more]
A0A6S7HZJ6_PARCT	4.400e-10	41.76	RNA-binding 39-like isoform X4 n=4 Tax=Alcyonacea ...	[more]
UPI001F036398	4.820e-10	40.66	RNA-binding protein 39-like n=1 Tax=Xenia sp. Carn...	[more]
A0A1C7NAH9_9FUNG	6.600e-10	37.63	RNA-binding protein rsd1 n=1 Tax=Choanephora cucur...	[more]
A0A7J7JLC5_BUGNE	7.180e-10	37.84	PUF60 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0...	[more]
A0A6J8BFB3_MYTCO	8.530e-10	39.19	PUF60 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 70..144 e-value: 3.4E-17 score: 73.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 71..142 e-value: 6.6E-16 score: 57.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 69..148 score: 17.234
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 35..153 e-value: 4.9E-21 score: 77.0
None	No IPR available	PANTHER	PTHR47330	FAMILY NOT NAMED	coord: 60..191
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 64..152

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig11275	contig	Ecto-sp8_S_contig11275:2355..5857 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig11275.1639.1	mRNA_Ecto-sp8_S_contig11275.1639.1	Ectocarpus species8 EcLAC_412	mRNA	Ecto-sp8_S_contig11275 2355..5857 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp8_S_contig11275.1639.1 ID=prot_Ecto-sp8_S_contig11275.1639.1|Name=mRNA_Ecto-sp8_S_contig11275.1639.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=284bp
IQVGRPLNTESGVAGGIEGMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSG
VAAEQLKAAMGMTTAPAQTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEM
VQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQDQS
KPALSVLPPGLSAAGAAAQAAAQAAKAAASAAGGAAAAQAAARLTAASRL
QGLGNGGVANNGSNGGVGVVGGFAGRMQGGGVGGATGVPGVSRCMCLVNM
LGPEDADDEDTKAEILEEFGTCGTVLQVCALMV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf