mRNA_Ecto-sp8_S_contig11020.1395.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11020.1395.1
Unique NamemRNA_Ecto-sp8_S_contig11020.1395.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11020.1395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11020contigEcto-sp8_S_contig11020:1296..1688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size393
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.5246277-UTR-Ecto-sp8_S_contig11020:1295..13221681143188.5246277-UTR-Ecto-sp8_S_contig11020:1295..1322Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11020 1296..1322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.5356665-CDS-Ecto-sp8_S_contig11020:1322..16881681143188.5356665-CDS-Ecto-sp8_S_contig11020:1322..1688Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11020 1323..1688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11020.1395.1prot_Ecto-sp8_S_contig11020.1395.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11020 1323..1688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11020.1395.1

>prot_Ecto-sp8_S_contig11020.1395.1 ID=prot_Ecto-sp8_S_contig11020.1395.1|Name=mRNA_Ecto-sp8_S_contig11020.1395.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=122bp
MEVIAFLAIRPDNMCVCSGVACDVCFECRTWYTCVDRRRLTARVDGMKTR
AHTHVFSLVSGVARSMLILKTHTKASRAVSSEARMKCTRWESLDHVPERS
RTTTISLVDTWTNLGSGFDVR*
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mRNA from alignment at Ecto-sp8_S_contig11020:1296..1688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11020.1395.1 ID=mRNA_Ecto-sp8_S_contig11020.1395.1|Name=mRNA_Ecto-sp8_S_contig11020.1395.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11020:1296..1688+ (Ectocarpus species8 EcLAC_412)
CAGGGTGTTTGTCGCCGTATTCTCTGGATGGAAGTCATTGCTTTCCTCGC
CATTCGCCCTGATAACATGTGCGTTTGTTCGGGTGTTGCATGCGATGTTT
GTTTCGAGTGTCGGACGTGGTACACATGTGTCGACAGGCGCAGACTGACG
GCCAGGGTGGATGGGATGAAAACGCGCGCGCACACACACGTCTTTTCATT
AGTCAGCGGGGTAGCGCGGTCGATGCTAATACTAAAAACACACACGAAGG
CGTCACGTGCTGTGTCGTCGGAGGCGCGTATGAAGTGTACTAGATGGGAA
TCGTTGGACCATGTACCAGAGAGGAGTCGGACAACTACGATCTCTCTGGT
AGATACATGGACTAATTTGGGGTCGGGTTTTGACGTGCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11020:1296..1688+

>mRNA_Ecto-sp8_S_contig11020.1395.1 ID=mRNA_Ecto-sp8_S_contig11020.1395.1|Name=mRNA_Ecto-sp8_S_contig11020.1395.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11020:1296..1688+ (Ectocarpus species8 EcLAC_412)
ATGGAAGTCATTGCTTTCCTCGCCATTCGCCCTGATAACATGTGCGTTTG
TTCGGGTGTTGCATGCGATGTTTGTTTCGAGTGTCGGACGTGGTACACAT
GTGTCGACAGGCGCAGACTGACGGCCAGGGTGGATGGGATGAAAACGCGC
GCGCACACACACGTCTTTTCATTAGTCAGCGGGGTAGCGCGGTCGATGCT
AATACTAAAAACACACACGAAGGCGTCACGTGCTGTGTCGTCGGAGGCGC
GTATGAAGTGTACTAGATGGGAATCGTTGGACCATGTACCAGAGAGGAGT
CGGACAACTACGATCTCTCTGGTAGATACATGGACTAATTTGGGGTCGGG
TTTTGACGTGCGCTGA
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