mRNA_Ecto-sp8_S_contig10736.1112.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10736.1112.1 vs. uniprot
Match: D8LP69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP69_ECTSI) HSP 1 Score: 1049 bits (2712), Expect = 0.000e+0 Identity = 725/746 (97.18%), Postives = 734/746 (98.39%), Query Frame = 1
Query: 4 NMADAVLGVKGPTVDKKTVSYVVAGCFCVYALVYKIPIPCFGCQKNGFWYRCVMDTGDGTASCAAYKAAKSRVETAGRIMDEAGVYMDNLWDFTKTELPGVISDFIDTLKDQILGLKDRMAEKINLILTFLRDKMNLFWSKVKGVAVPTYEKFMDVVINPVIKFFVANLLQPATVVFEKIMEFRELVWTVLSNAIDKFANIPIGNFVGDVVDVFQKLPEAMDNLKGFMVMLINKIKNETIGVVNTGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNMNRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMKRAKNTHIGYNKGFVKINFRPLNWISAPGEVKKIDIDEVELPTIPVEKFGRIKEDLNIPNIPFDKINIPALDIPTVNIKAPADIKEIXXXXXXXXXXXXXXXXXXXXXXXXLPPIPGFGFISDRVEKVKESIREIFETAMAPLYDGLATLIALVGSIISSAKHFFYNYLTWTAIKSRVTQLMGLVGEGVSLLKDLFMNEIVPAFMKLIRAMADPILDFVKTATDHTWRFMKKLGTNVGSIFNESYRVIAKVTGVIAKGVFHTGLYVVGTTIERYTGWLPLPISVKLLLIFASIIWMFLGGFLSNGKALVDLALSVMQGSAVALTDLDHQLDLRFGVIEKAAPALSSFFMH 2241
NMADA LGV GPTVDKKTVSYVVAGCFCVYALVYKIPIPCFGCQK+GFWYRCVMDTG GTASCAA+KAAK+RVETAGRIMDEAGVYMDNLWDFTKTELPGVISDFI TLKDQILGLKDRMAEKINLILTFLRDKMNLFWSKVKGVAV TYE+FMDVVINPVIKFFVANLLQPATVVFEKIMEFRELVWTVLSNAIDKFANIPIGNFVGDVVDVFQKLPEAMD+LKGFMVMLINKIKNETIGVVNTGI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNMNRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMKRAKNTHIGYNKGFVKINFRPLNWISAPGEVKKIDIDEVELPTIPVEKFGRIKEDLNIPNIPFD+I+IPALDIPTVNIKAPADIKE XXXXXXXXXXXXXXXXXXXXXXXXLPPIPGFGFISDRVEKVKESIREIFETAMAPLYDGLATLIALVGSIISSAKHFFYNYLTWTAIKSRVTQLMGL GEGVSLLKDLFM+EIVPAFMKLIRAMADPIL FVKTATDHTWRFMKKLGTNVGSIFNESYRVIAKVTGVIAKGVFHTGLYVVGTTIERYTGWLPLPISVKLLLI ASIIWMFLGGFLSNGKALVDLALSVMQGSA+ALTDLDHQLDLRFGVIEKA PALSSFFMH
Sbjct: 3 NMADAALGVSGPTVDKKTVSYVVAGCFCVYALVYKIPIPCFGCQKDGFWYRCVMDTGHGTASCAAHKAAKNRVETAGRIMDEAGVYMDNLWDFTKTELPGVISDFIATLKDQILGLKDRMAEKINLILTFLRDKMNLFWSKVKGVAVSTYERFMDVVINPVIKFFVANLLQPATVVFEKIMEFRELVWTVLSNAIDKFANIPIGNFVGDVVDVFQKLPEAMDDLKGFMVMLINKIKNETIGVVNTGIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNMNRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMKRAKNTHIGYNKGFVKINFRPLNWISAPGEVKKIDIDEVELPTIPVEKFGRIKEDLNIPNIPFDQIDIPALDIPTVNIKAPADIKEXXXXXXXXXXXXXXXXXXXXXXXXXLPPIPGFGFISDRVEKVKESIREIFETAMAPLYDGLATLIALVGSIISSAKHFFYNYLTWTAIKSRVTQLMGLAGEGVSLLKDLFMDEIVPAFMKLIRAMADPILAFVKTATDHTWRFMKKLGTNVGSIFNESYRVIAKVTGVIAKGVFHTGLYVVGTTIERYTGWLPLPISVKLLLILASIIWMFLGGFLSNGKALVDLALSVMQGSAIALTDLDHQLDLRFGVIEKATPALSSFFMH 748
BLAST of mRNA_Ecto-sp8_S_contig10736.1112.1 vs. uniprot
Match: Q8QNM9_ESV1K (EsV-1-34 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM9_ESV1K) HSP 1 Score: 910 bits (2352), Expect = 0.000e+0 Identity = 615/747 (82.33%), Postives = 656/747 (87.82%), Query Frame = 1
Query: 1 NNMADAVLGVKGPTVDKKTVSYVVAGCFCVYALVYKIPIPCFGCQKNGFWYRCVMDTGDGTASCAAYKAAKSRVETAGRIMDEAGVYMDNLWDFTKTELPGVISDFIDTLKDQILGLKDRMAEKINLILTFLRDKMNLFWSKVKGVAVPTYEKFMDVVINPVIKFFVANLLQPATVVFEKIMEFRELVWTVLSNAIDKFANIPIGNFVGDVVDVFQKLPEAMDNLKGFMVMLINKIKNETIGVVNTGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNMNRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMKRAKNTHIGYNKGFVKINFRPLNWISAPGEVKKIDIDEVELPTIPVEKFGRIKEDLNIPNIPFDKINIPALDIPTVNIKAPADIKEIXXXXXXXXXXXXXXXXXXXXXXXXLPPIPGFGFISDRVEKVKESIREIFETAMAPLYDGLATLIALVGSIISSAKHFFYNYLTWTAIKSRVTQLMGLVGEGVSLLKDLFMNEIVPAFMKLIRAMADPILDFVKTATDHTWRFMKKLGTNVGSIFNESYRVIAKVTGVIAKGVFHTGLYVVGTTIERYTGWLPLPISVKLLLIFASIIWMFLGGFLSNGKALVDLALSVMQGSAVALTDLDHQLDLRFGVIEKAAPALSSFFMH 2241
NNMADAVLGVKGP VDKK+VSYVVAGCFCVYALVYKIPIPCFGCQKNGFWYRCVMDTGDGTASCAA+KAAKSRVETAGRIMDEAGVYMDNLWDFTKTELPGVISDFI TLKDQ+LGLKDRMAEKINLI+ FLRDK+ LFWSK+K VAV TYEKFM+VVINPVIKFFVANLL+PA VVFEK MEFR+L+W+VLSNA+DKFANIPIG+FVGDVVDVFQK+PEAMDNLKG +VMLINKIKN+TIGVVNTGI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IM++ +N + I R +WI PG+V+ I+ID VELPTIPVEKFGRIKE LNIPNIPF I+IPALDIPTVNIKAPADIK XXXXXXXXXXXXXXXXXXXXXX LP IPGFGFI+D+VEKVKESIREIFETAMAPLYDGLATLIALVGSIISSAKHFFYNYLTWTAIKSRVTQLMGL GEGVSLLKDLF+NEIVPAFMKLIR MADPIL FVK ATDHTWRFMKKLG NVGSIFN+SY+VI KVTGVIAKGVFHTGLY++GTT+ERYTG++PLP+SVKL+LI ASIIWMF GGFLSNGK +VDL+LSV+QG+AVALTDLDHQLDL FGVIEKA PA SSFFMH
Sbjct: 2 NNMADAVLGVKGPRVDKKSVSYVVAGCFCVYALVYKIPIPCFGCQKNGFWYRCVMDTGDGTASCAAHKAAKSRVETAGRIMDEAGVYMDNLWDFTKTELPGVISDFIATLKDQVLGLKDRMAEKINLIIAFLRDKIELFWSKIKNVAVSTYEKFMEVVINPVIKFFVANLLKPAIVVFEKNMEFRDLIWSVLSNAVDKFANIPIGDFVGDVVDVFQKIPEAMDNLKGLLVMLINKIKNDTIGVVNTGIRESIQGVETSVNFLSGKLDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVIKGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVPVNATVGIMEKVRNVKVPV------IKKRIFSWIKTPGKVRDINIDGVELPTIPVEKFGRIKEGLNIPNIPFKNIDIPALDIPTVNIKAPADIKXXXXXXXXXXXXXXXXXXXXXXXXFDLPSIPGFGFITDKVEKVKESIREIFETAMAPLYDGLATLIALVGSIISSAKHFFYNYLTWTAIKSRVTQLMGLAGEGVSLLKDLFVNEIVPAFMKLIRGMADPILAFVKAATDHTWRFMKKLGANVGSIFNKSYKVITKVTGVIAKGVFHTGLYIIGTTVERYTGFIPLPLSVKLMLIMASIIWMFFGGFLSNGKVIVDLSLSVIQGAAVALTDLDHQLDLGFGVIEKATPAASSFFMH 742 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10736.1112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10736.1112.1 >prot_Ecto-sp8_S_contig10736.1112.1 ID=prot_Ecto-sp8_S_contig10736.1112.1|Name=mRNA_Ecto-sp8_S_contig10736.1112.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=748bp MADAVLGVKGPTVDKKTVSYVVAGCFCVYALVYKIPIPCFGCQKNGFWYRback to top mRNA from alignment at Ecto-sp8_S_contig10736:3068..5317+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10736.1112.1 ID=mRNA_Ecto-sp8_S_contig10736.1112.1|Name=mRNA_Ecto-sp8_S_contig10736.1112.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2250bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10736:3068..5317+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10736:3068..5317+ >mRNA_Ecto-sp8_S_contig10736.1112.1 ID=mRNA_Ecto-sp8_S_contig10736.1112.1|Name=mRNA_Ecto-sp8_S_contig10736.1112.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2244bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10736:3068..5317+ (Ectocarpus species8 EcLAC_412)back to top |