mRNA_Ecto-sp8_S_contig10663.1029.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10663.1029.1
Unique NamemRNA_Ecto-sp8_S_contig10663.1029.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: D7FQG4_ECTSI (Cilia- and flagella-associated protein 52 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG4_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 3.920e-68
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 2
Query:   20 MAGVGSDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQANCDAEKPSG 349
            MAGVGSDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQANCDAEKPSG
Sbjct:    1 MAGVGSDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQANCDAEKPSG 110          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: A0A835Z6M8_9STRA (Cilia- and flagella-associated protein 52 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M8_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.220e-38
Identity = 65/104 (62.50%), Postives = 82/104 (78.85%), Query Frame = 2
Query:   38 DATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQANCDAEKPSG 349
            DA EL L +CIGF+G VLGG+K+TPCG Y VYPLG +++VRS+TG  K AFLEGHT++I CVAMS DG R+ +GQ NH GVKAD+C+WD+ +A  NCD+  P G
Sbjct:    6 DAPELNLEACIGFSGHVLGGLKVTPCGNYTVYPLGKMMIVRSLTG-GKTAFLEGHTNDICCVAMSPDGKRLATGQVNHPGVKADVCIWDMSRAVRNCDSHDPHG 108          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: A0A6V1NYK3_HETAK (Cilia- and flagella-associated protein 52 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NYK3_HETAK)

HSP 1 Score: 126 bits (317), Expect = 1.440e-31
Identity = 60/106 (56.60%), Postives = 82/106 (77.36%), Query Frame = 2
Query:   29 VGSDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQANCDAEKPS 346
            +  +ATEL+L+S IGF+G+V  G+K  PCG Y+VYPLGSI+V+R +  +NKQ+FLEGHT  ++C+A+S DGTR+ SGQ +H GVKAD+ VWDL +A+ NC    PS
Sbjct:    3 IAENATELQLNSVIGFSGEVPDGLKYLPCGEYIVYPLGSIIVLRHLQ-ENKQSFLEGHTQGVTCLAVSHDGTRLASGQTHHSGVKADVIVWDLEKAKENCRNGTPS 107          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: A0A7S3H4V8_9STRA (Cilia- and flagella-associated protein 52 (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4V8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.140e-27
Identity = 55/96 (57.29%), Postives = 72/96 (75.00%), Query Frame = 2
Query:   47 ELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQANCDA 334
            ELK+ S IGF GKV   +  TPCG Y+VYPLGS +V+++M  + K+AF +GHTSEISCV +S+DG R+ SGQ N MGVKAD+ +WDL QA+   D+
Sbjct:    4 ELKIKSVIGFNGKVNNALVYTPCGKYIVYPLGSFVVLKNMVTE-KEAFFDGHTSEISCVTVSADGNRLASGQINLMGVKADVIIWDLAQAKKLLDS 98          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: A0A7S0SIC7_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SIC7_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 3.260e-22
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 2
Query:   35 SDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDL 307
            S A+ L L S IGF GKV GG+ L P G  M+YPLG+ +V++ +     Q+FL+GHT E+SC+ +S+DG  + SGQ ++MG  AD+ VWDL
Sbjct:    2 STASPLPLESVIGFEGKVHGGLVLHPNGKTMLYPLGATIVIKELGDAFSQSFLQGHTDEVSCLTLSTDGRYLASGQISYMGFTADIIVWDL 92          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: A0A7S0SH92_9CHLO (Cilia- and flagella-associated protein 52 n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SH92_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-20
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 2
Query:   35 SDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDL 307
            S A+ L L S IGF GKV GG+ L P G  M+YPLG+ +V++ +     Q+FL+GHT E+SC+ +S+DG  + SGQ ++MG  AD+ VWDL
Sbjct:    2 STASPLPLESVIGFEGKVHGGLVLHPNGKTMLYPLGATIVIKELGDAFSQSFLQGHTDEVSCLTLSTDGRYLASGQISYMGFTADIIVWDL 92          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: A0A3B3RVS2_9TELE (Cilia- and flagella-associated protein 52 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RVS2_9TELE)

HSP 1 Score: 92.0 bits (227), Expect = 2.400e-19
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 2
Query:   20 MAGVGSDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQ 313
            M+G   +  +L+L + IGF G V  G+++ P   +++YPLGS ++++S+T   KQ FL GHT+ ISCVA+S  G  I SGQ   MG +AD+ +WD  Q
Sbjct:    6 MSGDAQEVPQLELQAVIGFNGHVFSGLRVHPNREHLIYPLGSTVILKSLTN-GKQQFLHGHTNNISCVAVSKSGRYIASGQVTFMGFRADIIIWDFPQ 102          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: A0A8B7XK75_ACAPL (Cilia- and flagella-associated protein 52 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XK75_ACAPL)

HSP 1 Score: 91.7 bits (226), Expect = 3.270e-19
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   38 DATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQANCDAE 337
            D  EL+L S  GF G V  G+K+ P   +++YPLG+ +++  +T K+ Q FL+GHT ++SCVA+S DG  I SGQ  +MG KA++ +WD  + +  C  E
Sbjct:    7 DYKELELLSTTGFNGNVYAGLKVHPDKEHIIYPLGNTVIIEHIT-KHTQNFLQGHTDDVSCVAISKDGKYIASGQVTYMGFKANIIIWDFNEKELYCRLE 105          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: UPI001EEA8DEA (cilia- and flagella-associated protein 52 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EEA8DEA)

HSP 1 Score: 90.1 bits (222), Expect = 1.130e-18
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   47 ELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDL 307
            +L+L S IGF G V+ G+++ P   +++YPLG  L+++++    KQ FL+GHT+ ISCVA+S  GT + SGQ  +MG KAD+ +WD 
Sbjct:    7 KLQLESVIGFNGHVISGLQVHPDQEHLIYPLGCTLIIKNLRD-GKQGFLQGHTNNISCVALSKSGTYLASGQVTYMGFKADVIIWDF 92          
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Match: A0A6J2W4T0_CHACN (Cilia- and flagella-associated protein 52 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W4T0_CHACN)

HSP 1 Score: 89.7 bits (221), Expect = 1.550e-18
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   20 MAGVGSDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQ 319
            M+G   +  +L+L + IGF G V  G+++ P   Y++YPLG  ++++S+    KQAFL GHT+ +SC+ +S  G  I SGQ  +MG KAD+ +WD  + +
Sbjct:    1 MSGETPEVPQLELEAVIGFNGHVFSGLRVHPDREYLIYPLGCTVILKSLKN-GKQAFLHGHTNNVSCITVSKSGRYIASGQVTYMGFKADVIIWDYAKRE 99          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10663.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQG4_ECTSI3.920e-68100.00Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A835Z6M8_9STRA2.220e-3862.50Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A6V1NYK3_HETAK1.440e-3156.60Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A7S3H4V8_9STRA4.140e-2757.29Cilia- and flagella-associated protein 52 (Fragmen... [more]
A0A7S0SIC7_9CHLO3.260e-2249.45Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S0SH92_9CHLO1.060e-2049.45Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A3B3RVS2_9TELE2.400e-1943.88Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A8B7XK75_ACAPL3.270e-1943.00Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
UPI001EEA8DEA1.130e-1845.98cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A6J2W4T0_CHACN1.550e-1840.00Cilia- and flagella-associated protein 52 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10663contigEcto-sp8_S_contig10663:4634..6662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score228.8
Seed ortholog evalue1.2e-57
Seed eggNOG ortholog2880.D7FQG4
Preferred nameWDR16
Model size350
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Cds size330
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.721986-UTR-Ecto-sp8_S_contig10663:4633..46521681143162.721986-UTR-Ecto-sp8_S_contig10663:4633..4652Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10663 4634..4652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.7317226-CDS-Ecto-sp8_S_contig10663:4652..47131681143162.7317226-CDS-Ecto-sp8_S_contig10663:4652..4713Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10663 4653..4713 +
1681143162.7405303-CDS-Ecto-sp8_S_contig10663:5908..60901681143162.7405303-CDS-Ecto-sp8_S_contig10663:5908..6090Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10663 5909..6090 +
1681143162.749181-CDS-Ecto-sp8_S_contig10663:6575..66621681143162.749181-CDS-Ecto-sp8_S_contig10663:6575..6662Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10663 6576..6662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10663.1029.1prot_Ecto-sp8_S_contig10663.1029.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10663 4653..6662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10663.1029.1

>prot_Ecto-sp8_S_contig10663.1029.1 ID=prot_Ecto-sp8_S_contig10663.1029.1|Name=mRNA_Ecto-sp8_S_contig10663.1029.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=110bp
MAGVGSDATELKLHSCIGFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMT
GKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQ
ANCDAEKPSG
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mRNA from alignment at Ecto-sp8_S_contig10663:4634..6662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10663.1029.1 ID=mRNA_Ecto-sp8_S_contig10663.1029.1|Name=mRNA_Ecto-sp8_S_contig10663.1029.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2029bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10663:4634..6662+ (Ectocarpus species8 EcLAC_412)
CCAAACTCAGACTGCAGCTATGGCGGGCGTTGGGAGTGATGCAACAGAGC TTAAGCTCCACTCTTGCATCGGCTTCACCGGTGAGCAATAGTACCCAGTT TTTTTGTGTATCGGATACCAGATCGCGCTCATGTGAGTTGGCCCGCTTGG GTGTGGCCGCCATGACCCCGGGGCTCTGCAGTGTCTGTGGGAGGCACTGG GGCCATCCCCCATGGCTAACACTCTGGGTGATTTGCGTGGTTCTTCGTGT TATTATTATATCGGTTTGAGATCGAGCATACCTGGTCTATGCGCGGTGTA AGCCGATCCCTCGTGGTCTGTGATGAACACCCGGTGTGTGCCATAGATTA CTGCTCTACAGCTGTACAGCACATGCAGTACAGCAGGGTCGGGGCAGCAG TATTGTATCCATAGATATGCATATGACGAACACACGCACATATTGCATTA TACAGACCACGCCTCAAGTCAACACCGCAGCAGATGGTATCACTAGGAAA CATTTCTATTGCCCGGCCTACTGCTACTGCTGTATCTTCTTTGTCCAAAA GAAAAAAAAAAGGTCTCTTTCTTTGTGCCCAGTAAATGCCGCTGTCCTGC CCAACATTTGTTCTTGTATAAGCAAATGCGTTGGGAGTTGTCAATGGCAT CAGCAGGCTCAAACTGCCGAATATCGGTACCATTGTGGTAACTATGCCAC CACCTGTGCATCTATTGATTTTGCCATCATTCTCTCAAGACACAGCAGTA TATCGCACTATTTACAACAATCGGTGTCTGCAGGGCAACAACAACAGCAG TAGGTTATTCTCTGAGCTGCCGCATTCCACAAAACGAACACAGAAGTGCA TGCGATCCGACCTTGGCTGGCCGATTGACCCCTTTCAGCTGCATTCCCTT CTAATATCGCCGGGAAGAGCGTCCTCTCGTTTCAGCTTGCCAGCATGCGC GCTTCCGTGTAGGTCAGTCTAGCGACGCTCGCGACGACTGTATCTGAAGG ATGTTGAAGTGGACAATGAGGGTCATCATGAGTCTACTCTTGTCTCTCGT AGGCTTGCTCTCTGGCTTGCCTCTCTCCCACCAGGCTGTCTCTGAGCTCC TCCATCTGTCTGGCTTTGTCCCCCATCCGGAACTACGTTGGTACCAACGA TTCTATAATGCACGAGGTGGCCGACCGGGAGCTACGAACGAATCACCCTA CAGTATCTCCACCGGCAGGCAAACGTCGACATCTGTTTCCTCGTCCCATG TCGGCTAATCGAACCATGTTCTCAGGCAAGGTGCTCGGGGGCATGAAGCT GACCCCATGCGGCGGCTACATGGTGTATCCTCTGGGGTCGATACTGGTGG TGCGGAGCATGACGGGGAAGAACAAGCAGGCCTTCTTGGAGGGACACACT TCGGAAATATCGTGCGTCGCCATGAGCTCCGATGGAACTCGCATCGTCTC CGGGCAGGTGCGTGTGTTGCTGCTGTTACTGTTCGGTGCTTTTTCTGTCG GTTGGTTTTGCCATGGCGGTTGTGGTGGTGGTTGCATGTTCAACTATTAA AAGCGTTTAGTCTGTCTCTCTACCTCGCATGTCTTCGCCCGGCATGTTTG GATGGGTGCGTGAGTGGTAGTTGCGAGAAGATCAGTCGAAGCGAAGAGAG GCAACCCTTCCATATATCTCTACCAGGGAGCACGGCGTAGAGCAAGAATA AAACCGAATGCTTGAGGAAAGAGAACGGTAGCATGGATTGGACTGAAGCT CGAAGAAATCAGAAGTGACACGGAACACTTCGAGAATTTGTTCAGCACCC GCATCCACTGCTCCTCTCTCGGCATCTCCCTACTCCAAATCGGCCACGGG CTTTATGAACGCGCGCTGTGTGCTTGTGACGGCTGTGACACCCGAAAACA CTTTTCAACGCAATGTTGCTGCTGCGGGGACTACCTACCCAGGCGAACCA CATGGGTGTGAAAGCGGACCTTTGCGTTTGGGACCTGATCCAAGCCCAAG CGAACTGCGACGCCGAGAAGCCGAGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10663:4634..6662+

>mRNA_Ecto-sp8_S_contig10663.1029.1 ID=mRNA_Ecto-sp8_S_contig10663.1029.1|Name=mRNA_Ecto-sp8_S_contig10663.1029.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10663:4634..6662+ (Ectocarpus species8 EcLAC_412)
ATGGCGGGCGTTGGGAGTGATGCAACAGAGCTTAAGCTCCACTCTTGCAT
CGGCTTCACCGGCAAGGTGCTCGGGGGCATGAAGCTGACCCCATGCGGCG
GCTACATGGTGTATCCTCTGGGGTCGATACTGGTGGTGCGGAGCATGACG
GGGAAGAACAAGCAGGCCTTCTTGGAGGGACACACTTCGGAAATATCGTG
CGTCGCCATGAGCTCCGATGGAACTCGCATCGTCTCCGGGCAGGCGAACC
ACATGGGTGTGAAAGCGGACCTTTGCGTTTGGGACCTGATCCAAGCCCAA
GCGAACTGCGACGCCGAGAAGCCGAGCGGG
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