mRNA_Ecto-sp8_S_contig10658.1020.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10658.1020.1
Unique NamemRNA_Ecto-sp8_S_contig10658.1020.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10658.1020.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE)

HSP 1 Score: 366 bits (940), Expect = 8.760e-118
Identity = 213/258 (82.56%), Postives = 222/258 (86.05%), Query Frame = 1 
Query:  211 MRPAFRDAMGGGLLGGTCLMXXXXXXSAAPGGEAFLCPAAVQRHGAAASGKMLQQRSAVKTRVIGSMTAGAGEGMLDVTSPDENASVTPSTPGPLRRVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGGKSSPEMPSVPALEQQLETAVGEVVEGVEEVASAIDKAGEAAGEVLSEIGEALEGLETPAAGSEGGNAVGGLVTTTTASEEDQGRAAGGVPTVGSVKNLVVENKEVVAVVVAGVIGSRYLLVQNGGK 984
            MRPAFRDAMGGG+LGGTCLM      S APGGEAFL PAAVQRHGAAASGKMLQQR AVKTR IGSMTAG  EGMLDV S DEN+SVT STPGPL RVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGG+S+PEMPSVPALEQQLETAVGEVVEGV E+ASA+DK             EALEGLETP AGSEGG+AVGGLVTTT A+EEDQGRA GGV TVG VK+LVVENKEVVAVVVAGVIGSRYLLVQ GGK
Sbjct:    1 MRPAFRDAMGGGVLGGTCLMVIVMVLSVAPGGEAFLHPAAVQRHGAAASGKMLQQRPAVKTRGIGSMTAGVEEGMLDVASRDENSSVTRSTPGPLLRVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGGRSAPEMPSVPALEQQLETAVGEVVEGVGEIASAVDKXXXXXXXXXXXXEEALEGLETPEAGSEGGDAVGGLVTTTPATEEDQGRAVGGVSTVGIVKDLVVENKEVVAVVVAGVIGSRYLLVQRGGK 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10658.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWI4_9PHAE8.760e-11882.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10658contigEcto-sp8_S_contig10658:231..5277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score257.7
Seed ortholog evalue6e-66
Seed eggNOG ortholog2880.D8LKD4
Model size1011
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2CI7K@1,2S3QS@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001190.1
Cds size801
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10658.1020.1prot_Ecto-sp8_S_contig10658.1020.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10658 231..5067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.164065-CDS-Ecto-sp8_S_contig10658:230..3231681143162.164065-CDS-Ecto-sp8_S_contig10658:230..323Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10658 231..323 -
1681143162.1794312-CDS-Ecto-sp8_S_contig10658:1867..20831681143162.1794312-CDS-Ecto-sp8_S_contig10658:1867..2083Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10658 1868..2083 -
1681143162.1912107-CDS-Ecto-sp8_S_contig10658:2719..29031681143162.1912107-CDS-Ecto-sp8_S_contig10658:2719..2903Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10658 2720..2903 -
1681143162.2006989-CDS-Ecto-sp8_S_contig10658:3900..40231681143162.2006989-CDS-Ecto-sp8_S_contig10658:3900..4023Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10658 3901..4023 -
1681143162.2093282-CDS-Ecto-sp8_S_contig10658:4882..50671681143162.2093282-CDS-Ecto-sp8_S_contig10658:4882..5067Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10658 4883..5067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.2184517-UTR-Ecto-sp8_S_contig10658:5067..52771681143162.2184517-UTR-Ecto-sp8_S_contig10658:5067..5277Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10658 5068..5277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10658.1020.1

>prot_Ecto-sp8_S_contig10658.1020.1 ID=prot_Ecto-sp8_S_contig10658.1020.1|Name=mRNA_Ecto-sp8_S_contig10658.1020.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=267bp
MRPAFRDAMGGGLLGGTCLMVIVVVLSAAPGGEAFLCPAAVQRHGAAASG
KMLQQRSAVKTRVIGSMTAGAGEGMLDVTSPDENASVTPSTPGPLRRVRS
LFGRKAATAAAVSALVSAGAPGSAEALFGRGGKSSPEMPSVPALEQQLET
AVGEVVEGVEEVASAIDKAGEAAGEVLSEIGEALEGLETPAAGSEGGNAV
GGLVTTTTASEEDQGRAAGGVPTVGSVKNLVVENKEVVAVVVAGVIGSRY
LLVQNGGKRGRGGGRR*
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mRNA from alignment at Ecto-sp8_S_contig10658:231..5277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10658.1020.1 ID=mRNA_Ecto-sp8_S_contig10658.1020.1|Name=mRNA_Ecto-sp8_S_contig10658.1020.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5047bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10658:231..5277- (Ectocarpus species8 EcLAC_412)
AGCTCCCTTTTGCGGAACCCCTACGCCGCCATGTCTTGCCTTGCATGCAA
GGCACAACAACAACGCTAGCCTGCCCCGTACGGTGGGTGCAGCGTGGTGT
GCACCGCACACGGTGGAGGACAATCATCCGAGGTTGAATCCTGGAATTGC
ATCCCTCTCTCAGCCGTATCAGAAGCCCTTTTGGAAGCTATCCCATCATT
CAACGGAATCATGCGGCCCGCCTTTCGTGACGCCATGGGCGGCGGCCTTC
TCGGCGGCACGTGCCTGATGGTCATCGTGGTGGTGCTCTCCGCGGCACCT
GGAGGGGAGGCGTTCCTGTGCCCTGCGGCTGTGCAGCGGCACGGTGCCGC
TGCCTCTGGGAAAATGCTACAGCAGCGTTCGGCGGTCAAGACGAGGTATT
ATACACAGACGGAGACAGACATGGGATGAACGAGTGTCGCAGCAACCCCA
CATGTACCACCTCGCTCTCGAGCGCGTTGGGTCGGGTTGCACCGAAAGGA
TTCGGTGCCGTGCAAGGGCCTTGTAGAACGGCAGCAGTAGTGATGGATCC
AGAAGCAGTTGCAGCAGTCGTTTGGAAGGTGTGTCCTCCTGTTCGAGCCG
AAAATGATGGAACGCGGATATTGGATCTGAAACCTCTCGTTGCCTTTCGG
TCCCCCTCCATACACCCGCCTGTTTGCCTGACTGCTGTATACTAACCCTG
TGTATTGCGTTTGGTCTACAAGCGTTCGGCGAAGGAGGTGATGCGAAGCC
TCTAGCTAGATGTCCCGCCCCCCCGGCACGAAAACGGCGGCTATTGCAAT
GTTGAAAGTTCTGAGCGTGCTTGCGTTTTTTTTTGCTCACGGTGTGTTTT
TACGCACATAAAAAGTGGGCAACGTGTCTTCTTTTCCGCCCTTTCGAAAC
GCCCACAACCCTATGCCACTTTGATGAAGTCATCTGCCCTGGCCCGCCTC
CGCCCACGTACAACTCCTCCTTTCCTCCGTGCTTTCAGCTCTCAGTCCGC
GCTTCCAGTTCCCGATGTACTCTTTGACATCAGTAAAAGACTCTTCTCGA
GCATACTTGTAACGATGTATGTTTGAGGTGCTCGCCTGTACCTTGACGCA
CCAGACGTGTTCCAGCGGTGTTGGTCGTCAAACTTGCCCCTCGTCGCCCC
CTCCTTTTCGTGCCTGCTGTACACTTGATTTATCCCTTCGTTTTTCCTGT
GCGTGCGTGCGCGTTGGCACATCGTGCCTTTTTTTATTTTTTTGTACCGC
GAAGGGTGATCGGGAGCATGACGGCGGGAGCTGGGGAGGGGATGCTCGAT
GTAACGTCCCCGGATGAAAACGCCTCTGTCACGCCGTCGACGCCAGGACC
GCTGCGTCGCGTTCGGTCGTTGTTCGGGTGAGGAGGACCGCGATTCGCGT
TTAATCAGGGTTGTTGTTGTTGCTGCTGCTGCTTGTATGGAGGCGGACAG
CCTGCTGCCACAAGCGCAGGGAACGATTGGTGATACCTGGAGCTTGATTA
TTGGGACCATGGGTGGTAAATCGCGCTTGTGTTCGAATAGCCGTTATTTG
TTTCGAACAGAGTGGAAATTTTTGGGGTAGAGTAGAGGAGGGAAGAGAGA
GCGGGGATTCCTGTGGTGGGGGCTCCGTCCGCCCTACCATCTACACATCC
ACGTAACCCATTCACATATCCACGGAACCCTCAGGATTCCCGCGGATCAG
CGCAATCGAGTGCCGCGTACCCCAAACTTGTTTTTTGCTGGTTTGTGGTC
GCGCAAGTATGTTGTTCGCCGATGTCACCGTGGCCGGACCAATAGGACGG
CATATTTTTGCCGTCGCTACTCTATGTAGAGGTTTCGAACGACGAGAGGG
GGGCTCATGAACCCTGGGTTAAGCTATTAGAGGCACACACATTTTGACGT
TAACGTCCTTCTCTCCGAGTGCTGTAGGGTACGTGGATCTAACCCAGTGG
GGTAAACCCAAGCAGTCCTTTGAGTTAGTTCCTGGGGGGAAATGCCCAGT
TGCTTTTGGGGTTGCAATCGTTGCCGTTTCTCTTGGTCGTGGCGTTGGCT
GTTGCCTCCATGTTGTTGGTCGTCGTCGTTCACGATGGCCGTTCAGAGGG
TTTGTTATTGTTGTTGGTGGTGGTGGTGATGAATAGTAGTGACGACCGCA
GCGATAAGAAACGGTATTCCTACATCATACCACCGCTGCTGTCGCTCTCG
CTTCCTCCACTTGCGGTGCGCAACGATCGTCGACTGGCCGGTTGTTGTTG
TTATTGTTGTTTGTTTTTTTGTCTCTTCCCCCTACCCTCACGATCGACTC
TTTGCTGCTGCTGCGGCACAAATTCCGCTCTTTTTACTGCCGGTGGGGTG
GGTGGGTGGGTGGGTGGTCCGCAGGCGCAAGGCGGCGACGGCGGCCGCGG
TGTCGGCTCTTGTCAGCGCGGGGGCGCCGGGATCTGCGGAGGCGTTGTTT
GGTAGGGGGGGTAAGTCTTCGCCGGAGATGCCCTCCGTTCCTGCCCTCGA
GCAGCAGCTGGAGACCGCCGTCGGAGAGGTGGTGGAGGGCGTGGAAGAGG
TTGCTTCGGTGCGTGTTGTTGTTGTTCTTGTTGTTGCTGTTGTTGATGGC
GTTGCGATTTAGTGTTGTTGGCTATTGCTGTTGTTGACGTTGACGTTGTT
GTTGGTGGTGGTGGTGGTGGTGGTGTTGCTGTTGTTGATGGCGTTGCGAT
TTAGTGTTGTTGGCTATTGCTGTTGTTGACGTTGTCGTTGTTGTTGTTGT
TGTTGATGGCGTTGTGGTTGTTGCTGTTGCGATGTATAGGGTTGTTGGCT
GTTGCTGTTGATAATGATTATGCCGTTTGCTTGTTTAATTATGTTGTTGT
TGTTGCTATTGCTGCTGTTCGCGTTGTCGTTGTCGTTGTTGATGTTGATG
CTCTTGCTGCTGCTGCTGCTGCTGTTGACGTTGTCGTTGGTGTTGTTGAA
GTTGGTATTGGCGGTGGCGGTGACGATCATATGGTTCTTTATGTCTTCGT
TGTTAGTGATGTACCCTTCTTCATGTGTGTTCATTAGAAGTGCTATCCGT
CGCCTCCCCCTACCCCACTCGAACACAAGCCCCGATGATATCTTGATGTC
CATCCTGCTAGCTCCCTCGCTTTCCTGGACGCTGCGGCCTCACCCCCCCC
GCCTCCTCCGGTAATATGGCGTAACCCCCCCCCCAAAAAACCAGGCAATA
GACAAAGCTGGAGAAGCGGCGGGAGAAGTGCTCTCGGAGATCGGGGAGGC
CCTCGAAGGGCTGGAAACCCCGGCGGCGGGATCGGAGGGCGGGAATGCTG
TTGGGGGGTTGGTGACGACGACGACTGCCTCGGAAGAGGACCAAGGGAGG
GCGGCGGGAGGCGTGCCTACCGTGGGTAGCGTCAAGAACCTGGTGGTCGA
AAACAAAGAGGTATGTACAGAACGCGCGCTACAGTACAAAAGCACTCGAA
GAACCACTTCTTGATTTTTCAATATTTTCCAACAAAGAGGACAGAACGCC
TAGCACGAGTCACTTCTTGACTTTTTTAACTTTGCTCCCGGGGCTCGTTT
CTTGTGTTTCTCTGTGGGGTATTCATAGTATAACGAAACCAAGATCGACC
ATAACGTGGGGAAGAAGAACGGCCATACAGTTTGTCCTTTTCGTCGATGG
AAATTAAGAAATAGATAGCGACATTCAACGAATTATTTACAGGCAGGGAG
TTGACATGACGAGGGCGGCCAAGGCGGCAAGGCAGGCGTGAACTAACGGT
GCTAACGGCAGGGTGGTAGGCACTGCGAGCGACGGTAACATCATAAAAGC
GCCGGCGAAGGCCACAGATAGGACCGCGTTGTTTACTAAAGCTCGATTGC
TCCACAACCAAGGAGATGATATCGAGACCCTACTTGCACACTCACAAGGA
AAGGAACCTCTCTCTCTAGACGAAGAGCTCTTTTCAAGGCCGACATATTT
TTGTCGGCAGTTGTTGTGGCAGCCCTCTTGGGGGGCTGGCTGTACGTGGA
GCACTCGAGCTTTTAAAGAAAACTCGACCGCACGCTTACCTGTAAGCTCG
CTCGCGCTACATGTCTACGTATGACGGGTGTGGTCGTCGCTCTCAACACC
AAGCTACTTACCTTTGGTTCACGCCTACCCTGCTGCCCTCGCGACCCTTG
ACGTCAACTATGTTCTTGTAGTTCGTTGATTGCTGTTGTCTTAACATTGA
TAAAACATTCCCATGTCTCCCTAGTACCGATCCAGCCGACGCGGACGCCT
TCCGTGATCACATCAGGCCTACTACAGTACTGTACACCCAAACAGAGTAT
TATACTGGGGAGTAGTACCAAACGAGCTTCCTGATGGCGCTAGGATACCG
AAGATTGAGCAATCCACGGTATTGACTAGGAGTACCCGCCCGCCCCTGCC
AGCTAGTGGCACATGGAAGGCCGGCCCGTTTTTGCATCAGTGTGGTGTCC
CAAGTGCCAACGGTTCTCGGAACGGATGTATCAATGTTGCACTTTGATTG
CGAACGCATGGATCCTACAAGTACGCTTCCGAAGGTATCTAGATATCTAC
TATCATCACTCACAGAAAGCCCTGTTTTGCTGTGTGTCTCTCTCTCTTGC
TTTGTCTGTAGCGCAGTGATAGAACGTTCTGGCCACCTTCCAATTCTCCT
CCTCATTCTTACTTGCGAAGAAAAAATAAACGATTTCGAGCAAGACAAGA
AGCTGCTCCCACCAATTGGTGTCAACCACTAACGAAAAGACATAGCGTTC
AACGACGAAAGGCTTTCAGGTTCAACGTCGTGTCGGCGTCGCCCTCTCGA
TTCAGGCCGTTTTCAAACGTTTCTCTCTGTCTCTGGTCTGATGGTATTGA
CGCTGAGAACGCGCAGTACTTTTTTCTTGTTTCTGTTGCGTTCATGCTGC
TCTGACCCCCCGATTGCGGCTGGAACCTCCCCCCCGCCCTCGGGGGTTCC
GCAGGTGGTAGCGGTGGTGGTTGCCGGGGTGATCGGGTCTAGGTACCTGC
TGGTCCAGAACGGCGGTAAACGTGGCCGAGGTGGAGGCCGGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10658:231..5277-

>mRNA_Ecto-sp8_S_contig10658.1020.1 ID=mRNA_Ecto-sp8_S_contig10658.1020.1|Name=mRNA_Ecto-sp8_S_contig10658.1020.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10658:231..5277- (Ectocarpus species8 EcLAC_412)
ATGCGGCCCGCCTTTCGTGACGCCATGGGCGGCGGCCTTCTCGGCGGCAC
GTGCCTGATGGTCATCGTGGTGGTGCTCTCCGCGGCACCTGGAGGGGAGG
CGTTCCTGTGCCCTGCGGCTGTGCAGCGGCACGGTGCCGCTGCCTCTGGG
AAAATGCTACAGCAGCGTTCGGCGGTCAAGACGAGGGTGATCGGGAGCAT
GACGGCGGGAGCTGGGGAGGGGATGCTCGATGTAACGTCCCCGGATGAAA
ACGCCTCTGTCACGCCGTCGACGCCAGGACCGCTGCGTCGCGTTCGGTCG
TTGTTCGGGCGCAAGGCGGCGACGGCGGCCGCGGTGTCGGCTCTTGTCAG
CGCGGGGGCGCCGGGATCTGCGGAGGCGTTGTTTGGTAGGGGGGGTAAGT
CTTCGCCGGAGATGCCCTCCGTTCCTGCCCTCGAGCAGCAGCTGGAGACC
GCCGTCGGAGAGGTGGTGGAGGGCGTGGAAGAGGTTGCTTCGGCAATAGA
CAAAGCTGGAGAAGCGGCGGGAGAAGTGCTCTCGGAGATCGGGGAGGCCC
TCGAAGGGCTGGAAACCCCGGCGGCGGGATCGGAGGGCGGGAATGCTGTT
GGGGGGTTGGTGACGACGACGACTGCCTCGGAAGAGGACCAAGGGAGGGC
GGCGGGAGGCGTGCCTACCGTGGGTAGCGTCAAGAACCTGGTGGTCGAAA
ACAAAGAGGTGGTAGCGGTGGTGGTTGCCGGGGTGATCGGGTCTAGGTAC
CTGCTGGTCCAGAACGGCGGTAAACGTGGCCGAGGTGGAGGCCGGAGGTG
A
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