prot_Ecto-sp8_S_contig10658.1020.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10658.1020.1
Unique Nameprot_Ecto-sp8_S_contig10658.1020.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length267
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10658.1020.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 2.440e-118
Identity = 212/258 (82.17%), Postives = 221/258 (85.66%), Query Frame = 0 
Query:    1 MRPAFRDAMGGGLLGGTCLXXXXXXXSAAPGGEAFLCPAAVQRHGAAASGKMLQQRSAVKTRVIGSMTAGAGEGMLDVTSPDENASVTPSTPGPLRRVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGGKSSPEMPSVPALEQQLETAVGEVVEGVEEVASAIDKAGEAAGEVLSEIGEALEGLETPAAGSEGGNAVGGLVTTTTASEEDQGRAAGGVPTVGSVKNLVVENKEVVAVVVAGVIGSRYLLVQNGGK 258
            MRPAFRDAMGGG+LGGTCL       S APGGEAFL PAAVQRHGAAASGKMLQQR AVKTR IGSMTAG  EGMLDV S DEN+SVT STPGPL RVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGG+S+PEMPSVPALEQQLETAVGEVVEGV E+ASA+DK             EALEGLETP AGSEGG+AVGGLVTTT A+EEDQGRA GGV TVG VK+LVVENKEVVAVVVAGVIGSRYLLVQ GGK
Sbjct:    1 MRPAFRDAMGGGVLGGTCLMVIVMVLSVAPGGEAFLHPAAVQRHGAAASGKMLQQRPAVKTRGIGSMTAGVEEGMLDVASRDENSSVTRSTPGPLLRVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGGRSAPEMPSVPALEQQLETAVGEVVEGVGEIASAVDKXXXXXXXXXXXXEEALEGLETPEAGSEGGDAVGGLVTTTPATEEDQGRAVGGVSTVGIVKDLVVENKEVVAVVVAGVIGSRYLLVQRGGK 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10658.1020.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWI4_9PHAE2.440e-11882.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..266
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..34
score: 0.795
NoneNo IPR availableTMHMMTMhelixcoord: 9..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10658contigEcto-sp8_S_contig10658:231..5067 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10658.1020.1mRNA_Ecto-sp8_S_contig10658.1020.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10658 231..5277 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10658.1020.1 ID=prot_Ecto-sp8_S_contig10658.1020.1|Name=mRNA_Ecto-sp8_S_contig10658.1020.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=267bp
MRPAFRDAMGGGLLGGTCLMVIVVVLSAAPGGEAFLCPAAVQRHGAAASG
KMLQQRSAVKTRVIGSMTAGAGEGMLDVTSPDENASVTPSTPGPLRRVRS
LFGRKAATAAAVSALVSAGAPGSAEALFGRGGKSSPEMPSVPALEQQLET
AVGEVVEGVEEVASAIDKAGEAAGEVLSEIGEALEGLETPAAGSEGGNAV
GGLVTTTTASEEDQGRAAGGVPTVGSVKNLVVENKEVVAVVVAGVIGSRY
LLVQNGGKRGRGGGRR*
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