mRNA_Ecto-sp8_S_contig10635.997.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: D7FSF3_ECTSI (PsbP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF3_ECTSI) HSP 1 Score: 328 bits (840), Expect = 9.270e-112 Identity = 194/212 (91.51%), Postives = 195/212 (91.98%), Query Frame = 1
Query: 1 QAFVPPRPXXXXXXXXXXXXXXXXXXXXXXXXSRLDFLRGAGAAAATAAAGFALLPAAGNAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITAQCNESDYAKAGKTIDSLIASVTKKK 636
QAFVP P XXXXXXXXXXXXXXXXXXXXXX RLDFLRGA GFALLPAAGNAQTFTDDALGF FDVPDGWERNDAEISGRRKIVVYTSPTTPG NAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRM+ESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITAQCNESDYAK GKTIDSLIASVTKKK
Sbjct: 19 QAFVPSSPPAXXXXXXXXXXXXXXXXXXXXXXXRLDFLRGAXXXXXXXXXGFALLPAAGNAQTFTDDALGFNFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMLESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITAQCNESDYAKVGKTIDSLIASVTKKK 230
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: A0A835ZDA3_9STRA (PsbP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA3_9STRA) HSP 1 Score: 145 bits (367), Expect = 4.910e-41 Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 1
Query: 148 AGFALLPAAGNAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQLATITAQCNESDYAKAGKTID 606
A AL A + DD F F+VP GW + + EISGRRK+V++TS + NAF+A TP RGDFT+LGSFGT DEVS+T++P G+S M+ + + Y YDYI+ QEGRPEKH+K++W + L T+TAQC+E++Y +D
Sbjct: 4 AALALPALAAGTTEYVDDKFKFRFEVPAGWTQTETEISGRRKVVIWTSDGS--ANAFIAVTPVRGDFTSLGSFGTADEVSQTLIPNGKGISGEMLNVKSKNSMYYYDYIIAQEGRPEKHLKSVWSVVSGDA-LVTLTAQCDEANYPAYASQMD 153
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: A0A6V1S113_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S113_HETAK) HSP 1 Score: 144 bits (363), Expect = 1.850e-39 Identity = 67/145 (46.21%), Postives = 97/145 (66.90%), Query Frame = 1
Query: 193 TDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ--LATITAQCNESDYAKAGKTIDSLIAS 621
TD + F VP GWE+++A ISG R + ++ +P P NAFVA TP RGD+T+LGSFG LD V TV+P+ G+ SR +ES + + +Y YDY V QEGRPEK +KT++ + P++ L T TAQC+ +DY + G + ++ +S
Sbjct: 80 TDTKGAYSFQVPPGWEKSEAAISGGRTVTIFAAPGRPAANAFVAATPLRGDYTSLGSFGNLDYVESTVVPKGPGIESRCLESRSQRGTYFYDYTVKQEGRPEKRLKTIFAVVPDEFSPVLVTFTAQCDVADYEEYGTLLSAIASS 224
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: A0A7S4EZ64_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZ64_CHRCT) HSP 1 Score: 119 bits (299), Expect = 6.130e-30 Identity = 56/159 (35.22%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 181 AQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLP---------EASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ---LATITAQCNESDYAKAGKTIDSLIAS 621
A + D G F VP GW ++E+SG RK++ T P N FVA+TP RGD+T+LGSFG +D V T+LP E G+ +M+ T + +Y++DY+++Q G+P + ++T++ + +G+ L T+TAQC + Y + T+ ++ S
Sbjct: 62 ANEYVDQEYGVSFVVPSGWSPEESELSGGRKLLAATDPADTDFNLFVAFTPIRGDYTSLGSFGNIDFVGSTILPQCPNGACTLETDGIRGKMIAQSTGRGAYIFDYLIEQTGQPSRRLRTLFSVQTVEGRGQNLITLTAQCRQERYDELSTTLREIVDS 220
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: A0A7S0LK65_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LK65_9EUKA) HSP 1 Score: 116 bits (290), Expect = 1.790e-28 Identity = 56/158 (35.44%), Postives = 93/158 (58.86%), Query Frame = 1
Query: 184 QTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASG---------VSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ---LATITAQCNESDYAKAGKTIDSLIAS 621
QT+ D G F +P GW ++E+SG RK+V P+ N F+AYTP D+T+LGSFG +D V T+LP+ +G + +M+ T ++YV+DY ++Q G+P + ++T++ + E G+ L T+TAQC ++ Y + T+ ++I S
Sbjct: 77 QTYVDKEYGVSFGLPAGWNPTESELSGGRKLVAAADPSDVDFNIFIAYTPIAADYTSLGSFGNIDSVGLTLLPQCAGSSCSLASDGIQGKMISQATQSSAYVFDYSIEQIGQPIRRLRTLFSVQTEVGRGKNLVTLTAQCKQARYDELAPTLRAVIDS 234
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: A0A7S2FED2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FED2_9STRA) HSP 1 Score: 109 bits (272), Expect = 4.450e-26 Identity = 59/150 (39.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 178 NAQTFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEG-RPEKHIKTMWVLFPEQGQLATITAQCNESDYAKAG----KTIDSL 612
+QT++D A G F VP W ++ +I G RK+V+Y P NAFV +TP D+ LGSFGT+D V++TV+PE G+ S +++S K +Y +DY + +P +H+ T++ + P Q L T +AQ E++YAK K IDS
Sbjct: 61 ESQTYSDLATGTSFSVPGTWSQS-VQILGDRKLVLYVDPENTETNAFVLFTPVAADYRGLGSFGTIDLVARTVIPEGPGIESNLLDSKQVKGNYFFDYTIKASADQPIRHLLTIFAVVPGQ-MLVTYSAQTTEANYAKEKALLMKAIDSF 208
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: B7FU11_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FU11_PHATC) HSP 1 Score: 105 bits (261), Expect = 2.460e-24 Identity = 72/185 (38.92%), Postives = 101/185 (54.59%), Query Frame = 1
Query: 133 AATAAAGFALLPAAGNAQTFT---DDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVS-KTVLPEAS----GVSSRMVESYTYKNSYVYDYIVDQEG-RPEKHIKTMWVLFPEQGQ-------LATITAQCNESDYA-KAGKTIDSLIASVTKKK 636
A+ AA GF A + T T D GF DVP W R + ++S RR IVV+T P + FVAYTP R DFT+LGSFG++D+V+ +T+LP+A V + M+ + + K +Y +DY +P H +T++ L +QG L T+TAQC E YA K DS++ S K K
Sbjct: 41 ASAAAVGFPSTAVAVSVPTLTPFLDSRHGFTVDVPSQWSRTEQQLSDRRTIVVWTDPADARASVFVAYTPVRDDFTSLGSFGSVDQVAAQTILPKAQIAGVDVEATMLAAVSQKQAYFFDYRQAVPNVQPPTHFRTIFTL--QQGATGGAGAVLVTLTAQCPEELYATKYQSLFDSILDSYAKSK 223
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: A0A0M0J7U2_9EUKA (Psbp domain-containing protein chloroplastic-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J7U2_9EUKA) HSP 1 Score: 102 bits (255), Expect = 1.610e-23 Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = 1
Query: 187 TFTDDALGFIFDVPDGWERNDAEISGRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPE---------ASG--VSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ--LATITAQCNESDYAKAGKTIDSLIAS 621
++ D+ G F +P+G+ E++ R++V T P N F+A+TP R D+T+LGSFGT+D + T+LP+ ASG + M+E + K S+VYDY + Q+G P +H++++ + + L T+TAQC E +A T ++I S
Sbjct: 56 SYKDERYGVSFLLPEGYVMKPQELADGRRLVTATDPNDDTTNVFIAFTPIRPDYTSLGSFGTIDFIGSTLLPQCGSNGACAFASGDDIEGVMLEQASVKGSFVYDYTIQQQGGPMRHLRSLLAIKADGAASVLITLTAQCLEPKHAAVAATFKAIIES 213
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: A0A7S1XXW5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.180e-22 Identity = 55/142 (38.73%), Postives = 86/142 (60.56%), Query Frame = 1
Query: 223 VPDGWERNDAEIS-GRRKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNS--YVYDYIVDQEGRPEKHIKTMWVLFPEQG-----QLATITAQCNESDYAKAGK-TIDSLIAS 621
VP W R +A + G+ V Y SP NA +AYTP RGDFT+LGSFGT+ +V K +LP+ V+ RM+ + +++ YV+DY+V+ G P +H+KT++ L P+ + ++TAQ ESD+ + T+D ++ S
Sbjct: 28 VPGDWRRQEAPAAAGQIPAVAYLSPRGASFNAVLAYTPVRGDFTSLGSFGTIKDVEKFILPD--NVNGRMISAKATRSNKAYVFDYVVEAPGAPVRHLKTLFALVPQNKATDIPSIISLTAQVLESDFNSGVEATMDGILDS 167
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Match: W7TLE2_9STRA (Psbp domain-containing protein chloroplastic-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLE2_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.390e-22 Identity = 54/158 (34.18%), Postives = 88/158 (55.70%), Query Frame = 1
Query: 172 AGNAQTFTDDALGFIFD-VPDGWERNDAEISGR----RKIVVYTSPTTPGVNAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMVESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ---LATITAQCNESDYAKAGKTIDSLIAS 621
A Q++ D+ F+ +P W R D I R+IVV+ P++ N F+AYTP + DFTTLG+FG++ +V+KT++P+ GV S+++ K +Y YDY++ G+P++H+ T++ L G LAT T C E + D++ S
Sbjct: 109 AAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEA-NVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKS 265 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10635.997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10635.997.1 >prot_Ecto-sp8_S_contig10635.997.1 ID=prot_Ecto-sp8_S_contig10635.997.1|Name=mRNA_Ecto-sp8_S_contig10635.997.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=213bp QAFVPPRPPPASSPPPPATGGGETASSSAAAASRLDFLRGAGAAAATAAAback to top mRNA from alignment at Ecto-sp8_S_contig10635:246..4391- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10635.997.1 ID=mRNA_Ecto-sp8_S_contig10635.997.1|Name=mRNA_Ecto-sp8_S_contig10635.997.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4146bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10635:246..4391- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10635:246..4391- >mRNA_Ecto-sp8_S_contig10635.997.1 ID=mRNA_Ecto-sp8_S_contig10635.997.1|Name=mRNA_Ecto-sp8_S_contig10635.997.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10635:246..4391- (Ectocarpus species8 EcLAC_412)back to top |