mRNA_Ecto-sp8_S_contig105806.912.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105806.912.1
Unique NamemRNA_Ecto-sp8_S_contig105806.912.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: A0A5E7YIF9_9RHOB (Spermidine/putrescine transport system permease protein PotB n=14 Tax=Rhodobacterales TaxID=204455 RepID=A0A5E7YIF9_9RHOB)

HSP 1 Score: 314 bits (805), Expect = 2.220e-106
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWIYLLGGNGIPAL+EA+GLG IRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDD GLM
Sbjct:  118 YAWIYLLGGNGIPALLEAVGLGDIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDIGLM 285
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: A0A1B1PW17_9RHOB (ABC transporter permease n=22 Tax=Rhodobacterales TaxID=204455 RepID=A0A1B1PW17_9RHOB)

HSP 1 Score: 288 bits (736), Expect = 6.450e-96
Identity = 146/168 (86.90%), Postives = 157/168 (93.45%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWI+LLGG GIPAL+EA+G   +RL+NTPFAVLVGIVYGYLPLMVFPIYVALEKLD+ LLEAAADLGTPPWR+FLQITLPLSMPGVLTGSMLVFILL GEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVAL+VIMLI V +Y+R V+RFGA RDD GLM
Sbjct:  116 YAWIFLLGGKGIPALLEAIGFDDVRLLNTPFAVLVGIVYGYLPLMVFPIYVALEKLDQRLLEAAADLGTPPWRAFLQITLPLSMPGVLTGSMLVFILLMGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALVVIMLITVGIYTRLVKRFGASRDDVGLM 283
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: UPI0012ECD218 (ABC transporter permease n=1 Tax=Mesorhizobium xinjiangense TaxID=2678685 RepID=UPI0012ECD218)

HSP 1 Score: 284 bits (727), Expect = 1.610e-94
Identity = 145/168 (86.31%), Postives = 154/168 (91.67%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWI+LLGG GIPAL + +G+  +RLINTPFAVL+GIVYGYLPLMVFPIYVALEKLD+ LLEAAADLGTPPWRSFLQITLPLSMPGVLTG+MLVFILL GEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVAL+VIMLIVV LY R  RRF  GRDD GLM
Sbjct:  118 YAWIFLLGGRGIPALFDWVGIEGVRLINTPFAVLIGIVYGYLPLMVFPIYVALEKLDKQLLEAAADLGTPPWRSFLQITLPLSMPGVLTGTMLVFILLMGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALVVIMLIVVTLYGRLARRFSVGRDDVGLM 285
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: A0A5B8IB16_9RHOB (ABC transporter permease n=1 Tax=Qingshengfaniella alkalisoli TaxID=2599296 RepID=A0A5B8IB16_9RHOB)

HSP 1 Score: 280 bits (715), Expect = 1.000e-92
Identity = 143/168 (85.12%), Postives = 154/168 (91.67%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWI+LLGG G+PAL+E+ GL  IR+INTPFAVLVGIVYGYLPLMVFPIYVALEKLD+ LLEA+ADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILL GEFLIPA+LGGGKVFFVGNALVDLFLQSRNWAFGSAVAVAL+VIMLI V LY RA+ RF +G DD  LM
Sbjct:  116 YAWIFLLGGRGLPALLESFGLPEIRMINTPFAVLVGIVYGYLPLMVFPIYVALEKLDKRLLEASADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLMGEFLIPALLGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALVVIMLICVGLYRRALGRFASGPDDVSLM 283
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: UPI001553A51E (ABC transporter permease n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001553A51E)

HSP 1 Score: 279 bits (714), Expect = 1.520e-92
Identity = 140/168 (83.33%), Postives = 153/168 (91.07%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWI+LLGG GIPA +   GL  +RL+NTPFAVLVGIVYGYLPLMVFPIYVALEKLD+ LLEAAADLGTPPWR+FLQITLPLSMPGVLTGSMLVFILL GEFLIP+ILGGGKVFFVGNALVDLFLQSRNW FGSAVAV L+++ML+ V LY+RA +RFGAGRDDA LM
Sbjct:  118 YAWIFLLGGKGIPAFLAMFGLEDVRLLNTPFAVLVGIVYGYLPLMVFPIYVALEKLDKRLLEAAADLGTPPWRAFLQITLPLSMPGVLTGSMLVFILLMGEFLIPSILGGGKVFFVGNALVDLFLQSRNWPFGSAVAVGLVLVMLVTVGLYTRAAKRFGAGRDDAALM 285
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: A0A4S3MTI1_9RHOB (ABC transporter permease n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A4S3MTI1_9RHOB)

HSP 1 Score: 271 bits (692), Expect = 3.230e-89
Identity = 135/168 (80.36%), Postives = 152/168 (90.48%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWIYLLGG GIP+L+ A+GLG+ RLINTPFAVLVGIVYGYLPLMVFPIYVALE+LD+ LLEA+ADLG+PPWRSF+Q+TLP+SM GV TG MLVFILL GEFLIPA+LGGGKVFF+GNALVDLFLQSRNWAFGSAVAVAL++IML+ V  Y RAVRR+  GRDD  LM
Sbjct:  117 YAWIYLLGGQGIPSLLNALGLGNPRLINTPFAVLVGIVYGYLPLMVFPIYVALERLDKRLLEASADLGSPPWRSFVQVTLPMSMAGVATGCMLVFILLMGEFLIPAMLGGGKVFFIGNALVDLFLQSRNWAFGSAVAVALVLIMLVTVTAYMRAVRRWSGGRDDVSLM 284
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: D5AL07_RHOCB (Polyamine ABC transporter, permease protein PotB-3 n=6 Tax=Rhodobacter TaxID=1060 RepID=D5AL07_RHOCB)

HSP 1 Score: 268 bits (684), Expect = 5.480e-88
Identity = 134/168 (79.76%), Postives = 148/168 (88.10%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWI+LLGG GIP L+  +GLG +RLINTPFAVLVGIVYGYLPLMVFPIYV+LEKLDR LLEAA DLG PPWRSF+QITLPLS+PGV TGSMLVFILL GE+LIP +LGGGKVFFVGNALVDLFLQSRNWAFGSA+AV L+ IML+ V LY R ++R GA RDD GLM
Sbjct:  118 YAWIFLLGGRGIPQLLSDLGLGDLRLINTPFAVLVGIVYGYLPLMVFPIYVSLEKLDRRLLEAAGDLGAPPWRSFVQITLPLSLPGVATGSMLVFILLMGEYLIPQMLGGGKVFFVGNALVDLFLQSRNWAFGSALAVTLVAIMLVTVTLYMRFLKRIGAARDDVGLM 285
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: A0A6L6J930_9RHOB (ABC transporter permease subunit n=4 Tax=Paracoccus TaxID=265 RepID=A0A6L6J930_9RHOB)

HSP 1 Score: 266 bits (680), Expect = 2.080e-87
Identity = 132/168 (78.57%), Postives = 149/168 (88.69%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWI+LLGG GIPAL+  +GLG IRLINTPFAVLVGIVYGYLPLMVFPIYV+LE+LD+ LLEA++DLG PPWRSFLQ+TLPLS+PGV TGSMLVFILL GE+LIP +LGGGKVFFVGNALVDLFLQSRNWAFGSA+AV L+ +ML+ V LY R + R GA RDD GLM
Sbjct:  116 YAWIFLLGGRGIPALLADLGLGDIRLINTPFAVLVGIVYGYLPLMVFPIYVSLERLDKRLLEASSDLGAPPWRSFLQVTLPLSLPGVATGSMLVFILLMGEYLIPQMLGGGKVFFVGNALVDLFLQSRNWAFGSAMAVTLVAVMLVTVTLYMRFLSRIGAARDDVGLM 283
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: A0A258GN32_9RHOB (ABC transporter permease n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A258GN32_9RHOB)

HSP 1 Score: 264 bits (674), Expect = 8.840e-87
Identity = 133/168 (79.17%), Postives = 146/168 (86.90%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWIYLLGG GIP L+  +GLG  RLINTPFAVL GIVYGYLPLMVFPIYV+LE+LD+ LLEA+ADLG+PPWRSFLQ+TLPLSMPGV TG MLVFILL GEFLIPA+LGGGKVFFVGNALVDLFLQSRNW FG+AVAVAL+VIML+ V  Y R  RR+  GRDD  LM
Sbjct:   96 YAWIYLLGGQGIPKLVSLLGLGSPRLINTPFAVLTGIVYGYLPLMVFPIYVSLERLDKRLLEASADLGSPPWRSFLQVTLPLSMPGVATGCMLVFILLMGEFLIPAMLGGGKVFFVGNALVDLFLQSRNWPFGAAVAVALVVIMLVTVTAYMRFTRRWAGGRDDVSLM 263
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BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Match: A0A421BJ26_9RHOB (ABC transporter permease n=1 Tax=Sinirhodobacter hankyongi TaxID=2294033 RepID=A0A421BJ26_9RHOB)

HSP 1 Score: 264 bits (674), Expect = 1.810e-86
Identity = 130/168 (77.38%), Postives = 150/168 (89.29%), Query Frame = 1 
Query:    1 YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGEFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFGAGRDDAGLM 504
            YAWI+LLGG GIPAL+  +GLG  RLINTPFAVLVGIVYGY+PLM FPIYV+LEKLDR LLEAA+DLG+PPWRSF+Q+TLPLS+PGV TGSMLVFILL GE+LIP +LGGGKVFFVGNALVDLFLQSRNWAFGSA++V L+ +ML+VV LY R ++R GA R+D GLM
Sbjct:  118 YAWIFLLGGRGIPALLADLGLGDWRLINTPFAVLVGIVYGYMPLMFFPIYVSLEKLDRKLLEAASDLGSPPWRSFVQVTLPLSLPGVATGSMLVFILLMGEYLIPQMLGGGKVFFVGNALVDLFLQSRNWAFGSAMSVTLVAVMLVVVTLYMRFLKRIGAAREDVGLM 285
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105806.912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E7YIF9_9RHOB2.220e-10697.62Spermidine/putrescine transport system permease pr... [more]
A0A1B1PW17_9RHOB6.450e-9686.90ABC transporter permease n=22 Tax=Rhodobacterales ... [more]
UPI0012ECD2181.610e-9486.31ABC transporter permease n=1 Tax=Mesorhizobium xin... [more]
A0A5B8IB16_9RHOB1.000e-9285.12ABC transporter permease n=1 Tax=Qingshengfaniella... [more]
UPI001553A51E1.520e-9283.33ABC transporter permease n=2 Tax=Rhodobacterales T... [more]
A0A4S3MTI1_9RHOB3.230e-8980.36ABC transporter permease n=4 Tax=Alphaproteobacter... [more]
D5AL07_RHOCB5.480e-8879.76Polyamine ABC transporter, permease protein PotB-3... [more]
A0A6L6J930_9RHOB2.080e-8778.57ABC transporter permease subunit n=4 Tax=Paracoccu... [more]
A0A258GN32_9RHOB8.840e-8779.17ABC transporter permease n=2 Tax=Rhodobacterales T... [more]
A0A421BJ26_9RHOB1.810e-8677.38ABC transporter permease n=1 Tax=Sinirhodobacter h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105806contigEcto-sp8_S_contig105806:3..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score314.3
Seed ortholog evalue3.4e-83
Seed eggNOG ortholog314264.ROS217_17467
Model size507
KEGG koko:K11071
KEGG TC3.A.1.11.1
KEGG Pathwayko02010,map02010
KEGG ModuleM00299
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Binding-protein-dependent transport system inner membrane component
EggNOG OGs1P34V@1224,2U1N8@28211,46NTV@74030,COG1176@1,COG1176@2
Cds size507
COG Functional cat.P
Best tax levelRoseovarius
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143156.0669494-CDS-Ecto-sp8_S_contig105806:2..5091681143156.0669494-CDS-Ecto-sp8_S_contig105806:2..509Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105806 3..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105806.912.1prot_Ecto-sp8_S_contig105806.912.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105806 3..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105806.912.1

>prot_Ecto-sp8_S_contig105806.912.1 ID=prot_Ecto-sp8_S_contig105806.912.1|Name=mRNA_Ecto-sp8_S_contig105806.912.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=169bp
YAWIYLLGGNGIPALMEAMGLGHIRLINTPFAVLVGIVYGYLPLMVFPIY
VALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTG
EFLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVAL
YSRAVRRFGAGRDDAGLM*
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mRNA from alignment at Ecto-sp8_S_contig105806:3..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105806.912.1 ID=mRNA_Ecto-sp8_S_contig105806.912.1|Name=mRNA_Ecto-sp8_S_contig105806.912.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=507bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105806:3..509- (Ectocarpus species8 EcLAC_412)
TATGCGTGGATTTACCTGCTTGGGGGCAACGGCATACCGGCGCTGATGGA
GGCGATGGGGTTGGGCCATATCCGCCTGATCAACACGCCTTTTGCGGTGT
TGGTGGGGATTGTCTATGGCTATCTGCCGCTGATGGTTTTTCCGATCTAT
GTGGCGCTGGAAAAGCTGGATCGAAGCCTGCTGGAGGCGGCGGCGGATCT
GGGCACGCCGCCTTGGCGCAGTTTCCTGCAGATCACGCTGCCCTTGTCGA
TGCCGGGGGTTCTGACAGGCTCGATGCTGGTGTTCATCCTGCTGACTGGC
GAATTCCTGATCCCGGCCATTCTGGGCGGCGGCAAGGTGTTCTTTGTCGG
CAATGCGCTGGTCGATCTCTTTTTGCAGTCGCGCAACTGGGCGTTCGGAT
CGGCGGTCGCCGTGGCGCTGATCGTGATCATGCTGATTGTTGTGGCGCTC
TATAGCCGTGCTGTCCGGCGGTTTGGCGCGGGCCGCGACGATGCCGGGCT
GATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105806:3..509-

>mRNA_Ecto-sp8_S_contig105806.912.1 ID=mRNA_Ecto-sp8_S_contig105806.912.1|Name=mRNA_Ecto-sp8_S_contig105806.912.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105806:3..509- (Ectocarpus species8 EcLAC_412)
TATGCGTGGATTTACCTGCTTGGGGGCAACGGCATACCGGCGCTGATGGA
GGCGATGGGGTTGGGCCATATCCGCCTGATCAACACGCCTTTTGCGGTGT
TGGTGGGGATTGTCTATGGCTATCTGCCGCTGATGGTTTTTCCGATCTAT
GTGGCGCTGGAAAAGCTGGATCGAAGCCTGCTGGAGGCGGCGGCGGATCT
GGGCACGCCGCCTTGGCGCAGTTTCCTGCAGATCACGCTGCCCTTGTCGA
TGCCGGGGGTTCTGACAGGCTCGATGCTGGTGTTCATCCTGCTGACTGGC
GAATTCCTGATCCCGGCCATTCTGGGCGGCGGCAAGGTGTTCTTTGTCGG
CAATGCGCTGGTCGATCTCTTTTTGCAGTCGCGCAACTGGGCGTTCGGAT
CGGCGGTCGCCGTGGCGCTGATCGTGATCATGCTGATTGTTGTGGCGCTC
TATAGCCGTGCTGTCCGGCGGTTTGGCGCGGGCCGCGACGATGCCGGGCT
GATGTGA
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