mRNA_Ecto-sp8_S_contig1057.895.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1057.895.1
Unique NamemRNA_Ecto-sp8_S_contig1057.895.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1057.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1057contigEcto-sp8_S_contig1057:9073..9737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size666
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143154.9183245-CDS-Ecto-sp8_S_contig1057:9072..94591681143154.9183245-CDS-Ecto-sp8_S_contig1057:9072..9459Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1057 9073..9459 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143154.9277506-UTR-Ecto-sp8_S_contig1057:9459..97371681143154.9277506-UTR-Ecto-sp8_S_contig1057:9459..9737Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1057 9460..9737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1057.895.1prot_Ecto-sp8_S_contig1057.895.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1057 9073..9459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1057.895.1

>prot_Ecto-sp8_S_contig1057.895.1 ID=prot_Ecto-sp8_S_contig1057.895.1|Name=mRNA_Ecto-sp8_S_contig1057.895.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
FAWPSSLQQLSFGSRFDQPIAGVVLPSSLQQLSFGLYFNQPIAGVVWPAS
LQELSVGRLFDQPIAEVVWPSSLRQLSFGYKFNQPIARVVWPSSLQQLSF
GSRFNQPIAGVVWPNSLRSLIRDGKSLL*
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mRNA from alignment at Ecto-sp8_S_contig1057:9073..9737+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1057.895.1 ID=mRNA_Ecto-sp8_S_contig1057.895.1|Name=mRNA_Ecto-sp8_S_contig1057.895.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=665bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1057:9073..9737+ (Ectocarpus species8 EcLAC_412)
TTCGCGTGGCCGTCCTCCCTCCAACAGCTATCATTCGGGTCAAGATTCGA
TCAGCCTATCGCCGGAGTCGTGTTGCCGTCCTCCCTGCAACAACTATCGT
TCGGGTTATATTTTAATCAGCCCATTGCTGGAGTCGTGTGGCCGGCCTCC
CTGCAGGAGCTATCAGTCGGGAGACTCTTCGATCAGCCAATTGCCGAAGT
AGTGTGGCCGTCCTCCCTGCGGCAGCTTTCGTTCGGGTACAAGTTCAATC
AACCCATTGCTAGAGTTGTGTGGCCGTCCTCCCTGCAGCAGCTATCGTTC
GGGAGCCGCTTCAATCAGCCTATCGCCGGAGTCGTGTGGCCAAATTCGCT
GCGATCTTTGATACGTGATGGAAAAAGCCTGTTGTGAAAGGTTCAGGGGG
AGGTGATTCCGCGATTTCGTTCACCGTGTGTTGAAACGAATGACTTGTTT
TGTACCGGTGTTACAGTCCCAGCGCAGCGCACGTTTTATCATCCAGTATC
CACGAAATCAAATCAGGGAGAGTTGTTTCATTCTGTATGTATATAAGACA
TACTTCGAGGGCTACCTTCAGGCACATCAAATTATCATGGCAAGTGTGCA
ATCCTTGTGGGGTGTAGTAGCCGTCTTCCTGGTGAACGGTAGTGAAGGTT
TGGGCTCGGTAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1057:9073..9737+

>mRNA_Ecto-sp8_S_contig1057.895.1 ID=mRNA_Ecto-sp8_S_contig1057.895.1|Name=mRNA_Ecto-sp8_S_contig1057.895.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1057:9073..9737+ (Ectocarpus species8 EcLAC_412)
TTCGCGTGGCCGTCCTCCCTCCAACAGCTATCATTCGGGTCAAGATTCGA
TCAGCCTATCGCCGGAGTCGTGTTGCCGTCCTCCCTGCAACAACTATCGT
TCGGGTTATATTTTAATCAGCCCATTGCTGGAGTCGTGTGGCCGGCCTCC
CTGCAGGAGCTATCAGTCGGGAGACTCTTCGATCAGCCAATTGCCGAAGT
AGTGTGGCCGTCCTCCCTGCGGCAGCTTTCGTTCGGGTACAAGTTCAATC
AACCCATTGCTAGAGTTGTGTGGCCGTCCTCCCTGCAGCAGCTATCGTTC
GGGAGCCGCTTCAATCAGCCTATCGCCGGAGTCGTGTGGCCAAATTCGCT
GCGATCTTTGATACGTGATGGAAAAAGCCTGTTGTGA
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