mRNA_Ecto-sp8_S_contig10421.677.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10421.677.1
Unique NamemRNA_Ecto-sp8_S_contig10421.677.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10421.677.1 vs. uniprot
Match: A0A6H5K8L6_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L6_9PHAE)

HSP 1 Score: 812 bits (2098), Expect = 6.940e-291
Identity = 407/454 (89.65%), Postives = 422/454 (92.95%), Query Frame = 1 
Query:    1 QLPDVIGKRELCRLLVQADRRLIKAYLRDHRAQMKRPLEGRTIKSSSGREGETPTEDDLHGGDQKQERLSGGSRGGGKWRNGATRGGAGDVSEKSDEIESVSPFDTTKMNDEAEPSRPGEETRKCLREAQLVFSRLKTTAQAPEVGVGIGGLIFNAISAYLDIATGSIKLGAEKIKLCAKIFVRYPGLCRFSRWLHLSHCLLTVLATLEDAEPFEELRQAYNSVRTEDLAEVPEQRAWTMVGFCNHIFCRSFHDMGGKDTNTTEMEPDRCTVGAEEQHKLTSQEEGDRWACPAATTAPSDFCRDQASLGIGPRWVEGELPERAGALPTEFLPLDSVASFHGDHPSREPGARTPTVLSAAGFRAACDHDGHRTHAGGCCPARGAMANDSGTLDDPGAVAPFHSSSGPSCTAAYRALPSAWQEHSGLGFAIRSRRVEQRRSTTWLGFYGGSDVAML 1362
            +LPDVIGKRELCRLLVQ DRRLIKAYLRDHRAQ KRPLEGRT+K SSGREGETPTED L+GG QKQERL+GG RGGGKWRNGATRGGAGDVSEKSDEI S +P DTTKMND+AEPSRPGEETR CL EAQ+VFSRLKTTA  PEVGVGIGGLIFNAISAYLDI+TGS KLGAEK+KLCAKIFVRYPGLCRFSRW HLSHCLLTVLATLEDAEPFEELRQ YNSVRTEDL EVPEQ+AWTMVGFCNHIFCRSFHD+G K TNTTEME DR TVGAEEQHKL SQEEGDRWACPAATTAPS+FCRDQA LGI P WVEGELPERAGA PTEFLPLDSVAS HGDHPSREP ARTP+VLSAAGFRAACD DGHRTHAGGC PARGA+ANDSGTLDDPGAVAPFHSSSGPSCTAAYRALPSAWQEHSGLGF I SR+VEQRRSTTWLGFYGGSDVAML
Sbjct:  300 KLPDVIGKRELCRLLVQTDRRLIKAYLRDHRAQTKRPLEGRTLKPSSGREGETPTEDVLNGGGQKQERLNGGPRGGGKWRNGATRGGAGDVSEKSDEIVSFAPIDTTKMNDKAEPSRPGEETRTCLGEAQVVFSRLKTTATDPEVGVGIGGLIFNAISAYLDISTGSTKLGAEKVKLCAKIFVRYPGLCRFSRWQHLSHCLLTVLATLEDAEPFEELRQVYNSVRTEDLVEVPEQQAWTMVGFCNHIFCRSFHDLGLKATNTTEMELDRGTVGAEEQHKLASQEEGDRWACPAATTAPSEFCRDQAWLGIRPGWVEGELPERAGASPTEFLPLDSVASVHGDHPSREPEARTPSVLSAAGFRAACDRDGHRTHAGGCYPARGAVANDSGTLDDPGAVAPFHSSSGPSCTAAYRALPSAWQEHSGLGFPIHSRQVEQRRSTTWLGFYGGSDVAML 753
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BLAST of mRNA_Ecto-sp8_S_contig10421.677.1 vs. uniprot
Match: D7FTD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD4_ECTSI)

HSP 1 Score: 793 bits (2049), Expect = 1.310e-284
Identity = 405/476 (85.08%), Postives = 420/476 (88.24%), Query Frame = 1 
Query:    1 QLPDVIGKRELCRLLVQADRRLIKAYLRDHRAQMKRPLEGRTIKSSSGREGETPTEDDLHGGDQKQERLSGGSRGGGKWRNGATRGGAGDVSEKSDEIESVSPFDTTKMNDEAEPSRPGEETRKCLREAQLVFSRLKTTAQAPEVGVGIGGLIFNAISAYLDIATGSIKLGAEKIKLCAKIFVRYPGLCRFSRWLHLSHCLLTVLATLEDAEPFEELRQAYNSVRTEDLAEVPEQRAWTMVGFCNHIFCRSFHDMGGKDTNTTEMEPDRCTVGAEEQHKLTSQEEGDRWACPAATTAPSDFCRDQASLGIGPRWVEGELPERAGALPTEFLPLDSVASFHGDHPSREPGARTPTVLSAAGFRAACDHDGHRTHAGGCCPARGAMANDSGTLDDPGAVAPFHSSSGPSCTAAYRALPSAWQEHSGLGFA-------------------------IRSRRVEQRRSTTWLGFYGGSDV 1353
            +LPDVIGKRELCR LVQADRRLIKAYLRDHRAQMKRPLEGRT KSSSGREGETPTED L+GG QKQERL+G  RGG KWRNGATRGGAGDVSEKS+EIESVSP DTTKMNDEAEPSRPGEETR+C+REAQ+VFS+LKTTAQ PEVGVGIGGLIFNAISAYLDIA GS KLGAEK+KLCAKIFVR          LHLSHCLLTVLATLEDAEPFEELRQAYNSVRTEDLAEVPEQ+AWTMVGFCNHIFCRSFHD+G K+TNTTEMEPDR TVGAE+QHKLTSQEEGDRWACPAATTAPS+FCRDQA LG GP WVEGELPERAGALPTEFLPLDSVASFHGDHPSREPGA TPT LSAAGFRAACDHDGHRTHAGGCCPARGA+ANDSGTLDDPGAVAPFHSSSGPSCTAAYRALPSAWQEHSGLGF                          IRSRRVEQRRSTTWLG YGGSD 
Sbjct:  209 ELPDVIGKRELCRFLVQADRRLIKAYLRDHRAQMKRPLEGRTTKSSSGREGETPTEDGLNGGGQKQERLNGRPRGGDKWRNGATRGGAGDVSEKSNEIESVSPIDTTKMNDEAEPSRPGEETRRCVREAQVVFSKLKTTAQIPEVGVGIGGLIFNAISAYLDIAAGSTKLGAEKMKLCAKIFVR----------LHLSHCLLTVLATLEDAEPFEELRQAYNSVRTEDLAEVPEQKAWTMVGFCNHIFCRSFHDLGQKETNTTEMEPDRGTVGAEDQHKLTSQEEGDRWACPAATTAPSEFCRDQAWLGTGPSWVEGELPERAGALPTEFLPLDSVASFHGDHPSREPGAHTPTFLSAAGFRAACDHDGHRTHAGGCCPARGAVANDSGTLDDPGAVAPFHSSSGPSCTAAYRALPSAWQEHSGLGFPSXXXXXXXXXXXXXXXXXXXXXXXXIRSRRVEQRRSTTWLGLYGGSDA 674
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10421.677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8L6_9PHAE6.940e-29189.65Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FTD4_ECTSI1.310e-28485.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10421contigEcto-sp8_S_contig10421:3627..6737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1365
Hectar predicted targeting categoryother localisation
Exons5
Cds size1365
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143141.0217838-CDS-Ecto-sp8_S_contig10421:3626..42421681143141.0217838-CDS-Ecto-sp8_S_contig10421:3626..4242Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10421 3627..4242 -
1681143141.030505-CDS-Ecto-sp8_S_contig10421:4640..48081681143141.030505-CDS-Ecto-sp8_S_contig10421:4640..4808Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10421 4641..4808 -
1681143141.0387495-CDS-Ecto-sp8_S_contig10421:5214..52441681143141.0387495-CDS-Ecto-sp8_S_contig10421:5214..5244Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10421 5215..5244 -
1681143141.0470905-CDS-Ecto-sp8_S_contig10421:5830..59561681143141.0470905-CDS-Ecto-sp8_S_contig10421:5830..5956Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10421 5831..5956 -
1681143141.056405-CDS-Ecto-sp8_S_contig10421:6312..67371681143141.056405-CDS-Ecto-sp8_S_contig10421:6312..6737Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10421 6313..6737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10421.677.1prot_Ecto-sp8_S_contig10421.677.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10421 3627..6737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10421.677.1

>prot_Ecto-sp8_S_contig10421.677.1 ID=prot_Ecto-sp8_S_contig10421.677.1|Name=mRNA_Ecto-sp8_S_contig10421.677.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=455bp
QLPDVIGKRELCRLLVQADRRLIKAYLRDHRAQMKRPLEGRTIKSSSGRE
GETPTEDDLHGGDQKQERLSGGSRGGGKWRNGATRGGAGDVSEKSDEIES
VSPFDTTKMNDEAEPSRPGEETRKCLREAQLVFSRLKTTAQAPEVGVGIG
GLIFNAISAYLDIATGSIKLGAEKIKLCAKIFVRYPGLCRFSRWLHLSHC
LLTVLATLEDAEPFEELRQAYNSVRTEDLAEVPEQRAWTMVGFCNHIFCR
SFHDMGGKDTNTTEMEPDRCTVGAEEQHKLTSQEEGDRWACPAATTAPSD
FCRDQASLGIGPRWVEGELPERAGALPTEFLPLDSVASFHGDHPSREPGA
RTPTVLSAAGFRAACDHDGHRTHAGGCCPARGAMANDSGTLDDPGAVAPF
HSSSGPSCTAAYRALPSAWQEHSGLGFAIRSRRVEQRRSTTWLGFYGGSD
VAML*
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mRNA from alignment at Ecto-sp8_S_contig10421:3627..6737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10421.677.1 ID=mRNA_Ecto-sp8_S_contig10421.677.1|Name=mRNA_Ecto-sp8_S_contig10421.677.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10421:3627..6737- (Ectocarpus species8 EcLAC_412)
CAGCTCCCCGACGTCATCGGCAAGAGGGAATTGTGCAGGTTGCTTGTCCA
AGCGGACAGGCGCTTGATCAAGGCGTACTTGAGAGATCACAGGGCACAAA
TGAAACGCCCTCTCGAGGGCCGCACTATTAAATCCTCGTCCGGCCGGGAG
GGCGAGACCCCGACCGAAGATGACCTACACGGAGGCGATCAGAAGCAAGA
AAGGCTCAGCGGGGGGTCCAGAGGAGGAGGCAAATGGAGGAATGGTGCAA
CACGCGGCGGAGCAGGCGACGTTTCGGAGAAGAGCGACGAGATCGAAAGC
GTCTCACCATTCGACACCACCAAGATGAATGACGAGGCAGAGCCAAGTCG
ACCGGGGGAGGAGACCAGGAAGTGCCTCAGGGAAGCGCAGTTGGTTTTCT
CGAGGCTCAAGACGACGGCACAAGCGTGAGTTCTGCCAGCATAAGCTTTG
GCAACAGGAGATTCGAACGGCGCACGTTCGTCTCTGGATTTGTGTCGATC
GGTGGTGTATTCTTGACACTTGTGCATGCTTCAACAGCGAACAAAAAATG
ACCTCACAAGCAAGGATCGCTCTTGCTGTCCTTCTAGGCGCCGGCCGATA
CATGTTGCCATGCGTCGTGCTTTTGCATTTCCTTGATGAATCTTGAATGT
CACCGTGTGGACCTTTCCTTTTGTCACCAATTGGACAGCAGAGTTAAATT
TCAACGAAATTCACGGTTGACACTCCGTGCCTCTGGTTTTGATTCATCGG
TGCTTCGCTCTTTTCTCGCACCTCTTGCCAGCCCGGAGGTTGGCGTTGGG
ATCGGAGGCCTCATTTTCAACGCCATTTCGGCGTACCTGGACATTGCGAC
TGGTAGCATCAAGCTCGGCGCTGAGAAGATTAAACTCTGCGCCAAGATCT
TCGTGAGGTGGGCTGTTTTGTAGTCCATGGTTTACCCTTTAATCATTTCA
TTGAACTAGCGTCCTTCGGCACTAGGAAACCGGTAGTATCGCGGTGACAG
ACCGGAGGCCATGCGTGGGCTTCTCGAAGGCAGCACCTCGAACTGTACAG
GGTTGCTCGGCTTGATTTGATTTGGTGAAGTCAACCTTAGCCGCCTTGGG
CGCACGTTTCGCTGAGGTGCATGCCGCAGTCGCTAGGCAGGTGACAGTCA
CGCGGGAACGAGTAAGATTTCTCGTATAGCCCTTTGGGAAGTTTCAAGCT
GCAAGTTGGCTCTCGATATTCGGATGGACTACCAAACCGGGATTCAACCG
ACGTTGTCATTTCATCCCCTCTTCGGCGGTCGATCGCTGCTTGAGTGCTT
GGCGACCTACGTTTGGCTACCGACAACCGTTCAGGACTGCATGTCCCCAA
CGTAGTCATGGTCATGCCCGAACTACTGTGGGGCACCCAGAGCTTATCGG
ATGATTCGACTTGTTCGATAGACATGTTGTCCTCCTCCTCAAGCTTGACT
ACAGTTCCTTTTTGACGCTGCTTCCCTCGCGCGTTTGCAACAGGTATCCG
GGACTCTGCCGCTTCTCCAGGTGGTAAGTCGGTTCTGTTGGCGGTTGAGG
AAAGAGGTTTCTCCGGTGCCGTAAACTCGTTTGGGATTCGGGCACGATCA
TGCTTCTTGGAGCTTGGAAGTGTCACTCTCTGTTTGGCATCTTGTAGGCT
GCTCGATTCATGACGCTCCTCGGCTTGTGCATCTGTGTACTGTAGTCCGA
ATACATCCGAGATACCCGTGCCTAGCCGCGCTCTTGGCTTTCATGCTTCA
ACGTCGTAGATGGCCGACTTAGAGGCCTCACGGAATGAGTTTTTCACGGT
AATTGCAAGGTCTGCTTCGTTGCCGACAATCGTTGCTGCCCAACGTGACA
TGCGAGCTAGCCCGGGTGGAGAGAGCACCAGCCAACCCCCATCACGCCGT
TCGTGCCCCCTCGCTTTCTCGGCCCACAGGCTACACCTGTCTCACTGCCT
GCTGACCGTGCTGGCTACACTCGAGGATGCTGAACCGTTCGAAGAGCTGC
GCCAGGCGTACAACTCGGTTCGCACCGAAGACCTTGCCGAGGTGCCCGAA
CAGAGAGCGTGGACCATGGTTGGCTTTTGCAACCACATCTTTTGCAGGTG
GGTTCCTTTTGTGGGTTCCGCGGGTATTTCGCCGAACCGGTGCACGACGT
GATCGCCATGACAGCAGCGAAGTTTGGTTGGACCACAACGAAACCCCTAA
TGCGTTCGTTTGGGAGGTTGGAGATGAAGCACAGCCGCAAGCTACAGTAT
TGAGAGACCGTGAGCAAACCTTCCGCCTTCCGCTGCTATGCAAGCGTTGT
TTCGCCCTCCGATCGCTTAACTCCTGCGACATGACGTGGATTGATGTTGG
CTGCCCCGGTGCAGCAGTAGTGCTGCATTTCACATGGGGCACACCTGACT
CCGTGCCCATTTTCTGGCGCTCCCTGTGCTGCCTTTTAACGGTGATATGG
TCATGATTCGATGTATGGCGTGGTGATATACTCGTCATTGGAAAGGTCTT
TCCATGACATGGGAGGGAAAGACACCAACACGACGGAGATGGAACCCGAT
CGCTGCACAGTTGGCGCAGAAGAGCAGCACAAGCTAACATCACAAGAAGA
AGGCGATCGCTGGGCATGCCCAGCCGCCACCACGGCTCCGAGTGATTTTT
GCCGGGATCAGGCGTCGCTAGGCATCGGGCCTCGCTGGGTCGAGGGTGAG
CTCCCGGAGAGAGCCGGTGCGTTACCTACGGAATTTCTTCCCTTGGACTC
CGTGGCAAGCTTCCACGGCGATCACCCAAGCAGGGAGCCAGGGGCTCGCA
CTCCCACGGTTCTGTCGGCGGCTGGGTTCAGGGCGGCATGTGACCACGAT
GGTCACCGCACTCACGCTGGCGGGTGCTGTCCAGCGCGCGGTGCCATGGC
AAACGATTCAGGCACCCTGGACGACCCTGGTGCTGTGGCACCGTTTCATT
CGTCGTCTGGACCTTCGTGTACCGCAGCCTACCGCGCGCTGCCTAGCGCA
TGGCAGGAACATTCTGGGCTGGGTTTCGCGATACGCAGCAGGCGGGTAGA
ACAACGACGGTCCACGACATGGCTTGGCTTCTATGGTGGGAGTGACGTGG
CGATGCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10421:3627..6737-

>mRNA_Ecto-sp8_S_contig10421.677.1 ID=mRNA_Ecto-sp8_S_contig10421.677.1|Name=mRNA_Ecto-sp8_S_contig10421.677.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1365bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10421:3627..6737- (Ectocarpus species8 EcLAC_412)
CAGCTCCCCGACGTCATCGGCAAGAGGGAATTGTGCAGGTTGCTTGTCCA
AGCGGACAGGCGCTTGATCAAGGCGTACTTGAGAGATCACAGGGCACAAA
TGAAACGCCCTCTCGAGGGCCGCACTATTAAATCCTCGTCCGGCCGGGAG
GGCGAGACCCCGACCGAAGATGACCTACACGGAGGCGATCAGAAGCAAGA
AAGGCTCAGCGGGGGGTCCAGAGGAGGAGGCAAATGGAGGAATGGTGCAA
CACGCGGCGGAGCAGGCGACGTTTCGGAGAAGAGCGACGAGATCGAAAGC
GTCTCACCATTCGACACCACCAAGATGAATGACGAGGCAGAGCCAAGTCG
ACCGGGGGAGGAGACCAGGAAGTGCCTCAGGGAAGCGCAGTTGGTTTTCT
CGAGGCTCAAGACGACGGCACAAGCCCCGGAGGTTGGCGTTGGGATCGGA
GGCCTCATTTTCAACGCCATTTCGGCGTACCTGGACATTGCGACTGGTAG
CATCAAGCTCGGCGCTGAGAAGATTAAACTCTGCGCCAAGATCTTCGTGA
GGTATCCGGGACTCTGCCGCTTCTCCAGGTGGCTACACCTGTCTCACTGC
CTGCTGACCGTGCTGGCTACACTCGAGGATGCTGAACCGTTCGAAGAGCT
GCGCCAGGCGTACAACTCGGTTCGCACCGAAGACCTTGCCGAGGTGCCCG
AACAGAGAGCGTGGACCATGGTTGGCTTTTGCAACCACATCTTTTGCAGG
TCTTTCCATGACATGGGAGGGAAAGACACCAACACGACGGAGATGGAACC
CGATCGCTGCACAGTTGGCGCAGAAGAGCAGCACAAGCTAACATCACAAG
AAGAAGGCGATCGCTGGGCATGCCCAGCCGCCACCACGGCTCCGAGTGAT
TTTTGCCGGGATCAGGCGTCGCTAGGCATCGGGCCTCGCTGGGTCGAGGG
TGAGCTCCCGGAGAGAGCCGGTGCGTTACCTACGGAATTTCTTCCCTTGG
ACTCCGTGGCAAGCTTCCACGGCGATCACCCAAGCAGGGAGCCAGGGGCT
CGCACTCCCACGGTTCTGTCGGCGGCTGGGTTCAGGGCGGCATGTGACCA
CGATGGTCACCGCACTCACGCTGGCGGGTGCTGTCCAGCGCGCGGTGCCA
TGGCAAACGATTCAGGCACCCTGGACGACCCTGGTGCTGTGGCACCGTTT
CATTCGTCGTCTGGACCTTCGTGTACCGCAGCCTACCGCGCGCTGCCTAG
CGCATGGCAGGAACATTCTGGGCTGGGTTTCGCGATACGCAGCAGGCGGG
TAGAACAACGACGGTCCACGACATGGCTTGGCTTCTATGGTGGGAGTGAC
GTGGCGATGCTGTGA
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