mRNA_Ecto-sp8_S_contig10409.666.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10409.666.1
Unique NamemRNA_Ecto-sp8_S_contig10409.666.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10409.666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10409contigEcto-sp8_S_contig10409:4636..5336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size701
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.4314847-UTR-Ecto-sp8_S_contig10409:4635..46481681143140.4314847-UTR-Ecto-sp8_S_contig10409:4635..4648Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10409 4636..4648 +
1681143140.4586778-UTR-Ecto-sp8_S_contig10409:5002..53361681143140.4586778-UTR-Ecto-sp8_S_contig10409:5002..5336Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10409 5003..5336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.4490454-CDS-Ecto-sp8_S_contig10409:4648..50021681143140.4490454-CDS-Ecto-sp8_S_contig10409:4648..5002Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10409 4649..5002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10409.666.1prot_Ecto-sp8_S_contig10409.666.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10409 4649..5002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10409.666.1

>prot_Ecto-sp8_S_contig10409.666.1 ID=prot_Ecto-sp8_S_contig10409.666.1|Name=mRNA_Ecto-sp8_S_contig10409.666.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=118bp
MRKRKNRTSNEGDRSRRVHAVRLDNTPLHTHNQNTSSHRSLCFALSSYPK
KKRNTGATTSATITRCQPSQMRQVSPTKTFETPTSTERPQQQQVWQKTQA
ERGRLHLSTHEASSDGR*
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mRNA from alignment at Ecto-sp8_S_contig10409:4636..5336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10409.666.1 ID=mRNA_Ecto-sp8_S_contig10409.666.1|Name=mRNA_Ecto-sp8_S_contig10409.666.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=701bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10409:4636..5336+ (Ectocarpus species8 EcLAC_412)
CCGGCGTGACACGATGCGCAAAAGAAAAAACCGAACGTCCAACGAAGGCG
ACAGATCTCGCCGGGTTCATGCCGTTAGACTCGACAACACCCCGTTACAC
ACCCACAACCAAAACACATCGTCACACCGTTCTCTCTGCTTTGCTTTGTC
TTCTTACCCGAAAAAAAAGCGCAACACCGGTGCCACCACCTCTGCGACGA
TCACTCGTTGCCAACCGTCACAGATGAGACAGGTCTCGCCCACCAAGACT
TTCGAAACACCGACCTCCACAGAACGACCACAGCAGCAGCAGGTGTGGCA
AAAGACGCAAGCCGAGAGAGGCAGGCTACACCTATCTACGCATGAAGCAA
GCAGCGATGGACGATAGTCCACGCCCCAATCGTGCCACAAAAAGACTCTA
CTGGCTGCCGGCTACCAACATTTTTGCACATGGAAGAAAATCTAGGACAC
CCCCCGGCTCGTCGCGAGCTCTATCCACCGCAGTACACCTATCCAACGTA
TCCCAACACCGGGACTCGCGGGCATCAGGATCGCCAGGCTATTCTAACAT
CACTCCACCCCCAACCCTACACCCGTAACCAACCGCTTTGATAATTTTAC
ACACGGCTCTCTAACTTTCGGACGAAAAAAAATCGCTCATTAATAGAACA
ACGTAGCTGCCGACACCACGAGAAAACTAGTGCGACAAGTCTAGCTGTCG
C
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10409:4636..5336+

>mRNA_Ecto-sp8_S_contig10409.666.1 ID=mRNA_Ecto-sp8_S_contig10409.666.1|Name=mRNA_Ecto-sp8_S_contig10409.666.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10409:4636..5336+ (Ectocarpus species8 EcLAC_412)
ATGCGCAAAAGAAAAAACCGAACGTCCAACGAAGGCGACAGATCTCGCCG
GGTTCATGCCGTTAGACTCGACAACACCCCGTTACACACCCACAACCAAA
ACACATCGTCACACCGTTCTCTCTGCTTTGCTTTGTCTTCTTACCCGAAA
AAAAAGCGCAACACCGGTGCCACCACCTCTGCGACGATCACTCGTTGCCA
ACCGTCACAGATGAGACAGGTCTCGCCCACCAAGACTTTCGAAACACCGA
CCTCCACAGAACGACCACAGCAGCAGCAGGTGTGGCAAAAGACGCAAGCC
GAGAGAGGCAGGCTACACCTATCTACGCATGAAGCAAGCAGCGATGGACG
ATAG
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