mRNA_Ecto-sp8_S_contig10353.575.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10353.575.1
Unique NamemRNA_Ecto-sp8_S_contig10353.575.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10353.575.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI)

HSP 1 Score: 676 bits (1744), Expect = 1.860e-229
Identity = 468/583 (80.27%), Postives = 473/583 (81.13%), Query Frame = 1 
Query:    1 VPALRAGVVSASRPRQAGMVIGVVPRYDPHGMGMPLMSRPGGXXXXXXXXDVPATGRQRAATASSLEQPREESILPAAALDAGRVISRRNSSPDPTSPSPPLGSNSSGGARGXXXXXXXXXXXXXXXXXXXXXXXPRADVRATSPVARRAAAGWPVPSGWVGGRSGGGDGRSDILARHTRRHSVSAPLLGSFPFSFWRVLQTSTVDGQAAXXXXXXXXXXXXXXARTAAADPVQRRHGGSSTETSGDSDSAEATGSGGEDGAGVRRETDRGVEGEGQGVVPVFSPPSGSRDEEEKEKREAGETQRAENTPVPACAGSAVPQADAPVPAAGGPDGRQAVAGPAGNALLGRGGPAETTKPLRDAIAVAGAAADVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLYTVGPGAASTAGVRSNKTNDVTVATNGNEDVSDGHHRERDDGGEAAEGGSWKAAGGGGAGDGRAHAGPGGSGAVVIGRGMASPGWASPGLADGAGQVFGXXXXXXXXXXXXXXXXXXXXXXXXLQGQESPRREEDSGDVLRLGLGGTQRWPDNEPGDSGGRDPPPMAPSGGR 1749
            VPALRAGVVSASRPRQAGMVIGVVP            S  GG        DVPATGRQRAATASSLEQPREESILPAAALDAGRVISRRNSSPDPTSPSPPLGSNSSG ARG       XXXXXXXXXXXXXXXXPRADVRATSPVARRAAAGWPVPSGWVG RSGGGDGRSD+LARHTRRHSVSAPLLGSFPFSFWRVLQTSTVDGQAA              ARTAAADPVQRRHGGS TETSGDSDSAEATGSGGEDG  +RRETDRGVEGEGQGVVPVFSPPSGSRDEE++EK EAGETQRAENTPVPACAGSAVPQADAPVPAA GPDGRQAVAGPAGNALLGRGGPAETTKPLRD IAVAGAAADVAA                XXXXXXXXXXXXXX    AS YTVGPGAASTAGVRSNKTNDVT+ATNGNED SDGH                           RAHAG GGSGAVV GRGM SP WASPG ADGAGQVFGXXXXXXXXXXXXXXXXXXXXXX  LQGQESPRREEDSGDVLRLGLGGTQRWPDNEPGDSGGRD PPMA S GR
Sbjct:  610 VPALRAGVVSASRPRQAGMVIGVVP------------SGGGG--------DVPATGRQRAATASSLEQPREESILPAAALDAGRVISRRNSSPDPTSPSPPLGSNSSGSARGDGVAAATXXXXXXXXXXXXXXXXPRADVRATSPVARRAAAGWPVPSGWVGDRSGGGDGRSDVLARHTRRHSVSAPLLGSFPFSFWRVLQTSTVDGQAAVGAAAATTTGIGY-ARTAAADPVQRRHGGSGTETSGDSDSAEATGSGGEDGVDIRRETDRGVEGEGQGVVPVFSPPSGSRDEEQEEKNEAGETQRAENTPVPACAGSAVPQADAPVPAAEGPDGRQAVAGPAGNALLGRGGPAETTKPLRDPIAVAGAAADVAAAPAGGQPSPPTASGCPXXXXXXXXXXXXXX----ASPYTVGPGAASTAGVRSNKTNDVTLATNGNEDGSDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXRAHAGAGGSGAVVSGRGMTSPAWASPGPADGAGQVFGXXXXXXXXXXXXXXXXXXXXXX--LQGQESPRREEDSGDVLRLGLGGTQRWPDNEPGDSGGRDSPPMASSEGR 1165
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BLAST of mRNA_Ecto-sp8_S_contig10353.575.1 vs. uniprot
Match: A0A6H5K0M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M1_9PHAE)

HSP 1 Score: 640 bits (1651), Expect = 1.010e-222
Identity = 448/583 (76.84%), Postives = 462/583 (79.25%), Query Frame = 1 
Query:    1 VPALRAGVVSASRPRQAGMVIGVVPRYDPHGMGMPLMSRPGGXXXXXXXXDVPATGRQRAATASSLEQPREESILPAAALDAGRVISRRNSSPDPTSPSPPLGSNSSGGARGXXXXXXXXXXXXXXXXXXXXXXXPRADVRATSPVARRAAAGWPVPSGWVGGRSGGGDGRSDILARHTRRHSVSAPLLGSFPFSFWRVLQTSTVDGQAAXXXXXXXXXXXXXX--ARTAAADPVQRRHGGSSTETSGDSDSAEATGSGGEDGAGVRRETDRGVEGEGQGVVPVFSPPSGSRDEEEKEKREAGETQRAENTPVPACAGSAVP---QADAPVPAAGGPDGRQAVAGPAGNALLGRGGPAETTKPLRDAIAVAGAAADVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLYTVGPGAASTAGVRSNKTNDVTVATNGNEDVSDGHHRERDDGGEAAEGGSWKAAGGGGAGDGRAHAGPGGSGAVVIGRGMASPGWASPGLADGAGQVFGXXXXXXXXXXXXXXXXXXXXXXXXLQGQESPRREEDSGDVLRLGLGGTQRWPDNEPGDSGGRDPPPMA 1734
            VPALRAGVVSASRPRQAGMVIGVVPRYDPHGMGMPL+SRPGG  XXXXXXDVPATGRQRAATASSLEQPREESILPAAALDAGRVISRRNSSPDPTSPSPPLGSNSSG ARG     XXXXXXXXXXXXXXXXXX RADVRATSPVARR AAGWPVPSGWVGGRSGGGDGRS + ARHTRRH+VSAPLLGSFPFS WRVLQTSTVDGQAA                ARTAA D VQRRHGGSS+ETSGDS               VRRET RGVEGEGQG+VPVFSPPSGSR  EE+EK+EAGE QRAE+TPVPA AGSAVP   QADAPVPAA  PDGRQAVA PAG+ALLGRGGPAETTKPLRD IAVAGAA ++AA                     XXXXXXXXXXX  AS YTVGP AASTAGVRSNK NDVTVAT GNED  DGHHR+R DGGEAAEG              RAHAG GGS AVV GRGM SP  ASPG ADG GQVF       XXXXXXXXXXXXXXXXXX QGQESPRR+E+SGDVLRLGLGGTQRWPDNEPGDSGGR  PPMA
Sbjct:   49 VPALRAGVVSASRPRQAGMVIGVVPRYDPHGMGMPLLSRPGGGSXXXXXXDVPATGRQRAATASSLEQPREESILPAAALDAGRVISRRNSSPDPTSPSPPLGSNSSGSARGNGVAPXXXXXXXXXXXXXXXXXXXRADVRATSPVARRTAAGWPVPSGWVGGRSGGGDGRSVVSARHTRRHNVSAPLLGSFPFSLWRVLQTSTVDGQAAAAAAGEAVATTTGVGHARTAATDLVQRRHGGSSSETSGDSXXXXXXXXXXXXXXXVRRETGRGVEGEGQGIVPVFSPPSGSRGVEEEEKKEAGEMQRAEDTPVPAYAGSAVPPAAQADAPVPAALCPDGRQAVAYPAGSALLGRGGPAETTKPLRDPIAVAGAATEIAAAPARGQSSLPRASGCPDGAAGXXXXXXXXXXXRGASPYTVGPVAASTAGVRSNKINDVTVATKGNEDAPDGHHRKRVDGGEAAEGXXXXXXXXXXXXXXRAHAGAGGSRAVVSGRGMTSPAQASPGPADGTGQVF----RGGXXXXXXXXXXXXXXXXXXXQGQESPRRQEESGDVLRLGLGGTQRWPDNEPGDSGGRASPPMA 627
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10353.575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLK2_ECTSI1.860e-22980.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0M1_9PHAE1.010e-22276.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10353contigEcto-sp8_S_contig10353:2390..4680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score688.7
Seed ortholog evalue2.3e-195
Seed eggNOG ortholog2880.D8LLK2
Preferred nameTMEM259
Model size1752
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
Exons2
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGsKOG2092@1,KOG2092@2759
Cds size1752
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.2962637-CDS-Ecto-sp8_S_contig10353:2389..39281681143134.2962637-CDS-Ecto-sp8_S_contig10353:2389..3928Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10353 2390..3928 -
1681143134.3080661-CDS-Ecto-sp8_S_contig10353:4467..46801681143134.3080661-CDS-Ecto-sp8_S_contig10353:4467..4680Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10353 4468..4680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10353.575.1prot_Ecto-sp8_S_contig10353.575.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10353 2390..4680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10353.575.1

>prot_Ecto-sp8_S_contig10353.575.1 ID=prot_Ecto-sp8_S_contig10353.575.1|Name=mRNA_Ecto-sp8_S_contig10353.575.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=584bp
VPALRAGVVSASRPRQAGMVIGVVPRYDPHGMGMPLMSRPGGGGGSGGGG
DVPATGRQRAATASSLEQPREESILPAAALDAGRVISRRNSSPDPTSPSP
PLGSNSSGGARGDGVAAATAAEAPAAASPPVALEPPRADVRATSPVARRA
AAGWPVPSGWVGGRSGGGDGRSDILARHTRRHSVSAPLLGSFPFSFWRVL
QTSTVDGQAAAAAAAATTTTGAGHARTAAADPVQRRHGGSSTETSGDSDS
AEATGSGGEDGAGVRRETDRGVEGEGQGVVPVFSPPSGSRDEEEKEKREA
GETQRAENTPVPACAGSAVPQADAPVPAAGGPDGRQAVAGPAGNALLGRG
GPAETTKPLRDAIAVAGAAADVAAAPAGGQPSPPTSSGCPDGAAAAAAAA
AGGGRGGGASLYTVGPGAASTAGVRSNKTNDVTVATNGNEDVSDGHHRER
DDGGEAAEGGSWKAAGGGGAGDGRAHAGPGGSGAVVIGRGMASPGWASPG
LADGAGQVFGGGGQRQQQQQQQQQQQQQWEEERLLQGQESPRREEDSGDV
LRLGLGGTQRWPDNEPGDSGGRDPPPMAPSGGR*
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mRNA from alignment at Ecto-sp8_S_contig10353:2390..4680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10353.575.1 ID=mRNA_Ecto-sp8_S_contig10353.575.1|Name=mRNA_Ecto-sp8_S_contig10353.575.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2291bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10353:2390..4680- (Ectocarpus species8 EcLAC_412)
GTTCCGGCGCTGAGGGCGGGGGTCGTCTCCGCCTCGCGGCCGCGGCAGGC
GGGCATGGTCATCGGAGTCGTGCCGAGGTACGACCCCCACGGGATGGGCA
TGCCGCTCATGTCGCGCCCGGGCGGCGGCGGCGGCAGCGGCGGCGGCGGC
GATGTGCCGGCGACGGGGCGGCAGCGGGCGGCCACGGCTTCGTCTCTCGA
GCAGCCGCGAGAGGTGTGTTGGTGCTGTTTCTCCCGTGGGCGCTAATGCA
GTCGCTGAAACTGGGGGTCGTCCGTTCCTATGTCTTGCTTCCTTTGGCGT
CCGTTACGGCCCGCCGGGGATAGCGTTACTGGCGGGCGAGCGGGCGAGAT
ATGTGATGGATGGGTAGTCGAGACGTTTCAACCTATGTGACGGTTGAGCC
ACGCGAAACCGCCAACGCCGACGAAACGGTATTTTTTTGCCCACTGTTTG
GCCCGACCGCCGAGGCACGCCCCCTTTGGTGTCGGCTGAAATGATCAAGC
AGCGAATTCTTTCGTGTTGGAGATGTTTGCCGCTCTTACGGTCTTTTTCT
CATCAGTGTATTCGTTTGTTATCCGTTTGGGTGATTTTTTTGACAGCCCA
TGTTCTTACCAGCGCACCGGCCGGTTCTGTTTAGGCGCCCAACGTCCTTA
CCGCCTGCTACCCGCTTTCGCGTTTCTCTTGTCCGGCCTGCGTCCCCGTG
TGCCTGCCCATGCACGTGTTGTGCTCTCTCTTGGTTTTCTTCCCACGCCA
AGGAGTCTATCCTGCCCGCTGCTGCACTAGACGCGGGCCGTGTCATCTCG
AGGAGAAACTCTTCCCCGGACCCGACAAGCCCATCGCCGCCTCTCGGCAG
CAACAGCAGCGGCGGCGCGCGCGGCGACGGCGTCGCTGCCGCTACGGCTG
CCGAGGCGCCTGCGGCAGCGTCGCCTCCGGTCGCGTTGGAGCCGCCGCGC
GCTGACGTACGAGCGACGAGCCCGGTTGCTCGACGGGCGGCGGCGGGGTG
GCCGGTTCCGAGCGGGTGGGTCGGGGGCCGTAGCGGCGGAGGTGACGGCA
GGTCTGACATCTTGGCAAGGCACACGAGGAGACATAGCGTGTCTGCGCCG
CTGCTGGGGTCGTTTCCGTTCTCCTTCTGGAGGGTGTTGCAGACTTCGAC
GGTTGATGGGCAGGCGGCGGCGGCGGCGGCGGCGGCGACGACGACGACCG
GAGCAGGACATGCCCGAACAGCCGCCGCCGATCCGGTTCAGCGGCGGCAT
GGGGGCAGCAGCACCGAAACTAGCGGTGATTCCGATTCTGCCGAAGCCAC
CGGCAGCGGCGGAGAGGACGGGGCGGGTGTTCGTAGAGAAACCGATCGGG
GCGTTGAAGGAGAGGGCCAAGGTGTCGTGCCGGTCTTCTCCCCCCCGAGC
GGGAGCAGAGACGAGGAGGAGAAGGAGAAGCGTGAAGCGGGGGAGACGCA
GAGGGCAGAAAATACGCCCGTCCCGGCGTGTGCTGGTTCGGCGGTGCCCC
AGGCTGATGCACCAGTCCCCGCCGCAGGGGGTCCGGACGGCAGACAAGCG
GTGGCTGGTCCTGCAGGGAACGCTCTTTTGGGTAGGGGTGGGCCGGCGGA
GACAACCAAGCCGCTGAGAGACGCTATCGCCGTGGCCGGTGCCGCCGCCG
ACGTTGCTGCTGCACCGGCTGGAGGGCAGCCTTCCCCCCCAACATCCTCT
GGCTGTCCTGATGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGGGG
AAGAGGAGGAGGAGCGTCGCTCTACACTGTGGGTCCTGGTGCCGCGAGCA
CCGCTGGTGTCAGAAGCAACAAGACCAACGATGTAACGGTAGCGACGAAT
GGCAACGAGGATGTATCTGATGGGCATCATCGGGAACGGGATGATGGCGG
GGAGGCTGCTGAGGGAGGGAGTTGGAAAGCAGCGGGAGGAGGCGGCGCCG
GCGACGGTAGGGCCCACGCCGGTCCGGGGGGGAGCGGAGCTGTCGTCATC
GGGAGGGGCATGGCGTCACCAGGGTGGGCTTCCCCGGGTCTCGCGGACGG
AGCGGGACAGGTTTTCGGGGGTGGGGGACAACGGCAGCAGCAGCAACAAC
AGCAGCAGCAGCAGCAGCAGCAGTGGGAGGAGGAGCGCTTGTTGCAGGGG
CAGGAATCGCCCCGGAGAGAAGAAGACAGCGGTGACGTCCTGCGGTTGGG
CCTGGGAGGGACTCAGCGGTGGCCGGACAATGAACCCGGTGACTCGGGCG
GGAGAGATCCGCCCCCGATGGCCCCGTCAGGAGGGCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10353:2390..4680-

>mRNA_Ecto-sp8_S_contig10353.575.1 ID=mRNA_Ecto-sp8_S_contig10353.575.1|Name=mRNA_Ecto-sp8_S_contig10353.575.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1752bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10353:2390..4680- (Ectocarpus species8 EcLAC_412)
GTTCCGGCGCTGAGGGCGGGGGTCGTCTCCGCCTCGCGGCCGCGGCAGGC
GGGCATGGTCATCGGAGTCGTGCCGAGGTACGACCCCCACGGGATGGGCA
TGCCGCTCATGTCGCGCCCGGGCGGCGGCGGCGGCAGCGGCGGCGGCGGC
GATGTGCCGGCGACGGGGCGGCAGCGGGCGGCCACGGCTTCGTCTCTCGA
GCAGCCGCGAGAGGAGTCTATCCTGCCCGCTGCTGCACTAGACGCGGGCC
GTGTCATCTCGAGGAGAAACTCTTCCCCGGACCCGACAAGCCCATCGCCG
CCTCTCGGCAGCAACAGCAGCGGCGGCGCGCGCGGCGACGGCGTCGCTGC
CGCTACGGCTGCCGAGGCGCCTGCGGCAGCGTCGCCTCCGGTCGCGTTGG
AGCCGCCGCGCGCTGACGTACGAGCGACGAGCCCGGTTGCTCGACGGGCG
GCGGCGGGGTGGCCGGTTCCGAGCGGGTGGGTCGGGGGCCGTAGCGGCGG
AGGTGACGGCAGGTCTGACATCTTGGCAAGGCACACGAGGAGACATAGCG
TGTCTGCGCCGCTGCTGGGGTCGTTTCCGTTCTCCTTCTGGAGGGTGTTG
CAGACTTCGACGGTTGATGGGCAGGCGGCGGCGGCGGCGGCGGCGGCGAC
GACGACGACCGGAGCAGGACATGCCCGAACAGCCGCCGCCGATCCGGTTC
AGCGGCGGCATGGGGGCAGCAGCACCGAAACTAGCGGTGATTCCGATTCT
GCCGAAGCCACCGGCAGCGGCGGAGAGGACGGGGCGGGTGTTCGTAGAGA
AACCGATCGGGGCGTTGAAGGAGAGGGCCAAGGTGTCGTGCCGGTCTTCT
CCCCCCCGAGCGGGAGCAGAGACGAGGAGGAGAAGGAGAAGCGTGAAGCG
GGGGAGACGCAGAGGGCAGAAAATACGCCCGTCCCGGCGTGTGCTGGTTC
GGCGGTGCCCCAGGCTGATGCACCAGTCCCCGCCGCAGGGGGTCCGGACG
GCAGACAAGCGGTGGCTGGTCCTGCAGGGAACGCTCTTTTGGGTAGGGGT
GGGCCGGCGGAGACAACCAAGCCGCTGAGAGACGCTATCGCCGTGGCCGG
TGCCGCCGCCGACGTTGCTGCTGCACCGGCTGGAGGGCAGCCTTCCCCCC
CAACATCCTCTGGCTGTCCTGATGGAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGGAGGGGGAAGAGGAGGAGGAGCGTCGCTCTACACTGTGGGTCCTGG
TGCCGCGAGCACCGCTGGTGTCAGAAGCAACAAGACCAACGATGTAACGG
TAGCGACGAATGGCAACGAGGATGTATCTGATGGGCATCATCGGGAACGG
GATGATGGCGGGGAGGCTGCTGAGGGAGGGAGTTGGAAAGCAGCGGGAGG
AGGCGGCGCCGGCGACGGTAGGGCCCACGCCGGTCCGGGGGGGAGCGGAG
CTGTCGTCATCGGGAGGGGCATGGCGTCACCAGGGTGGGCTTCCCCGGGT
CTCGCGGACGGAGCGGGACAGGTTTTCGGGGGTGGGGGACAACGGCAGCA
GCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGTGGGAGGAGGAGCGCT
TGTTGCAGGGGCAGGAATCGCCCCGGAGAGAAGAAGACAGCGGTGACGTC
CTGCGGTTGGGCCTGGGAGGGACTCAGCGGTGGCCGGACAATGAACCCGG
TGACTCGGGCGGGAGAGATCCGCCCCCGATGGCCCCGTCAGGAGGGCGAT
GA
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