mRNA_Ecto-sp8_S_contig103216.525.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103216.525.1
Unique NamemRNA_Ecto-sp8_S_contig103216.525.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: A0A0F9VAJ3_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9VAJ3_9ZZZZ)

HSP 1 Score: 205 bits (521), Expect = 1.100e-65
Identity = 106/142 (74.65%), Postives = 121/142 (85.21%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAHKHEANRNRPERGSRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M  ++II ISALS  ML+S+ALAQPAHAPAHGARDNAH+HE NR+RPER  R+DLPRINERELRQLLR++DAPRAE LPPGI+RNLE         AKRFDG LA+QLP+YPGYEWERVGADV+LIEAATRI++DVLV  LR
Sbjct:    1 MNPLRIIIISALSASMLNSIALAQPAHAPAHGARDNAHQHETNRHRPEREGRIDLPRINERELRQLLRQHDAPRAEPLPPGIQRNLEXXXXXXXXXAKRFDGQLAAQLPRYPGYEWERVGADVVLIEAATRIVIDVLVDVLR 142          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: A0A0D6E9S1_9GAMM (Uncharacterized protein n=30 Tax=Halomonas TaxID=2745 RepID=A0A0D6E9S1_9GAMM)

HSP 1 Score: 200 bits (508), Expect = 1.120e-63
Identity = 108/144 (75.00%), Postives = 119/144 (82.64%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAH--KHEANRNRPERGSRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M  IK+IA+SAL  L+L+S A AQP HAPAHGARD     +HE+NR    R  RVDLPRINERELRQLLRR+DAPRAESLPPGI+RNLERGKP+   IAKRFDG LASQLP YPGYEWERVGADV+LIEAATRI+VDVLV  LR
Sbjct:    1 MNPIKLIAMSALGALLLNSAAFAQPDHAPAHGARDKGQHQQHESNRPSQSRDERVDLPRINERELRQLLRRHDAPRAESLPPGIQRNLERGKPLXXXIAKRFDGQLASQLPHYPGYEWERVGADVVLIEAATRIVVDVLVDVLR 144          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: A0A511UJX0_9GAMM (Uncharacterized protein n=1 Tax=Halovibrio variabilis TaxID=31910 RepID=A0A511UJX0_9GAMM)

HSP 1 Score: 196 bits (497), Expect = 4.980e-62
Identity = 104/142 (73.24%), Postives = 114/142 (80.28%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAHKHEANRNRPERGSRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M  IK+I ISAL  L+L+S A AQP HAPAH ARD    HE++     R  RVDLPRINERELRQL R+YDAPRAESLPPGI+RNLERGKP    IAKRFDGP+ASQLPQYPGYEWERVG DV+LIEAATRI+VDVLV  LR
Sbjct:    1 MNPIKLIVISALGALLLNSAAFAQPDHAPAHSARDKGQPHESHWPGNSRDERVDLPRINERELRQLFRQYDAPRAESLPPGIQRNLERGKPXXXXIAKRFDGPIASQLPQYPGYEWERVGDDVVLIEAATRIVVDVLVDVLR 142          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: A0A651DCQ2_HALSX (Uncharacterized protein n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A651DCQ2_HALSX)

HSP 1 Score: 193 bits (491), Expect = 5.290e-61
Identity = 108/150 (72.00%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAHKHEANRNRPERGSR--------VDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M  IKIIAI ALS L+L+SVA AQPAHAPAHGAR+N  ++E+ R                VDLPRINERELRQLLR+  APRAE LPPGI+RNLERGKP+PPGIAKRFDG LASQLPQYPGYEWERVGADV+LIEAATRI+VDV+  ALR
Sbjct:    1 MNPIKIIAIGALSVLLLNSVAYAQPAHAPAHGARENNQQNESQRTXXXXXXXXXXXXXXXVDLPRINERELRQLLRQDYAPRAERLPPGIQRNLERGKPLPPGIAKRFDGQLASQLPQYPGYEWERVGADVVLIEAATRIVVDVINDALR 150          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: A0A117KIW3_9GAMM (Integral membrane protein n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A117KIW3_9GAMM)

HSP 1 Score: 189 bits (480), Expect = 2.580e-59
Identity = 107/151 (70.86%), Postives = 120/151 (79.47%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAHKHEANRN-RP--ERG------SRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M  IK+IA+SA  +L+L+S A AQPAHAPAHGARD     E NR+ RP  ER        RVDLPRINERE+R+LL R+DAPRAESLPPGI+RNLERGKP    IAKRFDG LASQLP+YPGYEWERVGADV+LIEAATRI+VDVLV  LR
Sbjct:    1 MNPIKLIALSAFGSLLLNSAAFAQPAHAPAHGARDKGQPQEYNRSDRPYDERSYNESYEERVDLPRINEREIRRLLSRHDAPRAESLPPGIQRNLERGKPXXXXIAKRFDGQLASQLPRYPGYEWERVGADVVLIEAATRIVVDVLVDVLR 151          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: UPI001F0F4033 (anti-virulence regulator CigR family protein n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F0F4033)

HSP 1 Score: 186 bits (471), Expect = 5.670e-58
Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAH-------KHEANRNRPERGSRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M  IK+I +S L  ++L+S A AQP HAPAHGARD  H       +HE +R+   R  RVDLPRINERELRQLLR++DAPRAESLPPGI+RNLERGK      AKRFDG LA+QLP YPGYEWERVGADV+LIEAATRI+VDVLV  LR
Sbjct:    1 MTPIKLIILSTLGAVLLNSAAFAQPDHAPAHGARDKGHNSREQAPQHETHRSGNTRDERVDLPRINERELRQLLRQHDAPRAESLPPGIQRNLERGKXXXXXXAKRFDGQLAAQLPNYPGYEWERVGADVVLIEAATRIVVDVLVDVLR 149          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: A0A0D5M351_9GAMM (Uncharacterized protein n=3 Tax=Halomonas TaxID=2745 RepID=A0A0D5M351_9GAMM)

HSP 1 Score: 183 bits (464), Expect = 6.590e-57
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAH-------KHEANRNRPERGSRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M  IK+I ++A   L+L+S A AQP HAPAHGARD ++       +H+A+     +  RVDLPRINE ELRQLLR++DAPRAESLPPG++RNLERGKP    IAKRFDG LA+QLPQYPGYEWERVGADV+LIEAATR++VDVLV  LR
Sbjct:    1 MTPIKLIILTACGALLLNSAAFAQPDHAPAHGARDKSNSSHHQTQQHDAHHTESAQYERVDLPRINEGELRQLLRQHDAPRAESLPPGVQRNLERGKPXXXXIAKRFDGRLAAQLPQYPGYEWERVGADVVLIEAATRVVVDVLVDVLR 149          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: A0A365TVR7_9GAMM (Uncharacterized protein n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A365TVR7_9GAMM)

HSP 1 Score: 182 bits (463), Expect = 9.360e-57
Identity = 100/149 (67.11%), Postives = 118/149 (79.19%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAH-------KHEANRNRPERGSRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M  IK+I+++A S L+L++VA AQP +APAHGARD  H       +HE++R    R  RVDLPRINERELRQLLR++DAPRAE+LPPGI+RNLERGK      AKRFDG  ASQLP+YPGYEWERVGADV+LIEAATRI+VDVLV  LR
Sbjct:    1 MAPIKLISLTAFSVLLLNNVAFAQPDNAPAHGARDKHHGHRDQAQQHESHRPENIREERVDLPRINERELRQLLRQHDAPRAEALPPGIQRNLERGKXXXXXXAKRFDGQFASQLPRYPGYEWERVGADVVLIEAATRIVVDVLVDVLR 149          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: G4F3H9_9GAMM (Integral membrane protein n=1 Tax=Halomonas sp. HAL1 TaxID=550984 RepID=G4F3H9_9GAMM)

HSP 1 Score: 181 bits (460), Expect = 2.680e-56
Identity = 99/149 (66.44%), Postives = 114/149 (76.51%), Query Frame = 1
Query:    1 MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAH-------KHEANRNRPERGSRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            M +IK+IA SAL  L+ +S   AQP HAPAHGARD  +       +H ++     +  RVDLPRINERELRQLLR++DAPRAESLPPGI+RNLERGK      AKRFDG LASQLPQYPGYEWERVGADV+LIEAATR++VDVLV  LR
Sbjct:    1 MNSIKLIAFSALGALLFNSATFAQPDHAPAHGARDKGNSSQHQTQQHGSHHKESAQYGRVDLPRINERELRQLLRQHDAPRAESLPPGIQRNLERGKXXXXXXAKRFDGRLASQLPQYPGYEWERVGADVVLIEAATRVVVDVLVDVLR 149          
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Match: A0A1U9R855_9GAMM (Uncharacterized protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A1U9R855_9GAMM)

HSP 1 Score: 179 bits (455), Expect = 1.870e-55
Identity = 100/144 (69.44%), Postives = 110/144 (76.39%), Query Frame = 1
Query:   34 LSTLMLDSVALAQPAHAPAHGARDNAHKHEANRNRPERGSR-------------VDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRFDGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR 426
            LS L+  S ALAQPAHAPAHGARDN+ +     +R ER                VDLPRINEREL +LLR+YDAPRAESLPPGI+RNLERGKP    IAKRFDG LASQLP+YPGYEWERVGADV+LIEAATRI+VDVLV ALR
Sbjct:   12 LSALLWHSAALAQPAHAPAHGARDNSSERHRVSDRQERRHHEXXXXDERRSDRYVDLPRINERELLRLLRQYDAPRAESLPPGIQRNLERGKPXXXXIAKRFDGQLASQLPRYPGYEWERVGADVVLIEAATRIVVDVLVDALR 155          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103216.525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9VAJ3_9ZZZZ1.100e-6574.65Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A0D6E9S1_9GAMM1.120e-6375.00Uncharacterized protein n=30 Tax=Halomonas TaxID=2... [more]
A0A511UJX0_9GAMM4.980e-6273.24Uncharacterized protein n=1 Tax=Halovibrio variabi... [more]
A0A651DCQ2_HALSX5.290e-6172.00Uncharacterized protein n=1 Tax=Halomonas sp. TaxI... [more]
A0A117KIW3_9GAMM2.580e-5970.86Integral membrane protein n=1 Tax=Halomonas sp. 54... [more]
UPI001F0F40335.670e-5867.79anti-virulence regulator CigR family protein n=1 T... [more]
A0A0D5M351_9GAMM6.590e-5765.77Uncharacterized protein n=3 Tax=Halomonas TaxID=27... [more]
A0A365TVR7_9GAMM9.360e-5767.11Uncharacterized protein n=1 Tax=Halomonas sulfidae... [more]
G4F3H9_9GAMM2.680e-5666.44Integral membrane protein n=1 Tax=Halomonas sp. HA... [more]
A0A1U9R855_9GAMM1.870e-5569.44Uncharacterized protein n=2 Tax=Halomonas TaxID=27... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103216contigEcto-sp8_S_contig103216:23..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score202.2
Seed ortholog evalue1.6e-49
Seed eggNOG ortholog1380358.JADJ01000001_gene1210
Preferred namecigR
Model size429
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.Nickel/cobalt transporter regulator
EggNOG OGs1N3PU@1224,1SE0B@1236,COG5455@1,COG5455@2
Cds size429
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.8186786-CDS-Ecto-sp8_S_contig103216:22..4511681143130.8186786-CDS-Ecto-sp8_S_contig103216:22..451Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103216 23..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103216.525.1prot_Ecto-sp8_S_contig103216.525.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103216 23..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103216.525.1

>prot_Ecto-sp8_S_contig103216.525.1 ID=prot_Ecto-sp8_S_contig103216.525.1|Name=mRNA_Ecto-sp8_S_contig103216.525.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=143bp
MKAIKIIAISALSTLMLDSVALAQPAHAPAHGARDNAHKHEANRNRPERG
SRVDLPRINERELRQLLRRYDAPRAESLPPGIRRNLERGKPVPPGIAKRF
DGPLASQLPQYPGYEWERVGADVILIEAATRIIVDVLVGALR*
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mRNA from alignment at Ecto-sp8_S_contig103216:23..451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103216.525.1 ID=mRNA_Ecto-sp8_S_contig103216.525.1|Name=mRNA_Ecto-sp8_S_contig103216.525.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103216:23..451+ (Ectocarpus species8 EcLAC_412)
ATGAAAGCTATCAAAATAATTGCCATCAGTGCACTGAGTACATTAATGCT TGATAGTGTCGCGTTGGCTCAACCGGCTCATGCCCCGGCCCACGGAGCGC GGGATAACGCCCATAAGCATGAGGCTAACCGGAATCGTCCGGAGCGAGGT AGTCGCGTCGACTTGCCACGCATTAATGAGCGCGAACTGCGCCAATTGTT GCGTCGGTACGACGCTCCCAGAGCTGAGTCTTTACCGCCAGGCATTCGGC GTAATTTAGAGCGTGGCAAACCAGTACCACCAGGCATTGCCAAGCGCTTC GATGGTCCGTTAGCGTCTCAATTGCCGCAATATCCAGGTTATGAGTGGGA ACGGGTAGGCGCGGATGTGATCCTGATTGAAGCGGCCACGCGCATTATAG TGGATGTGTTAGTGGGTGCTTTACGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103216:23..451+

>mRNA_Ecto-sp8_S_contig103216.525.1 ID=mRNA_Ecto-sp8_S_contig103216.525.1|Name=mRNA_Ecto-sp8_S_contig103216.525.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103216:23..451+ (Ectocarpus species8 EcLAC_412)
ATGAAAGCTATCAAAATAATTGCCATCAGTGCACTGAGTACATTAATGCT
TGATAGTGTCGCGTTGGCTCAACCGGCTCATGCCCCGGCCCACGGAGCGC
GGGATAACGCCCATAAGCATGAGGCTAACCGGAATCGTCCGGAGCGAGGT
AGTCGCGTCGACTTGCCACGCATTAATGAGCGCGAACTGCGCCAATTGTT
GCGTCGGTACGACGCTCCCAGAGCTGAGTCTTTACCGCCAGGCATTCGGC
GTAATTTAGAGCGTGGCAAACCAGTACCACCAGGCATTGCCAAGCGCTTC
GATGGTCCGTTAGCGTCTCAATTGCCGCAATATCCAGGTTATGAGTGGGA
ACGGGTAGGCGCGGATGTGATCCTGATTGAAGCGGCCACGCGCATTATAG
TGGATGTGTTAGTGGGTGCTTTACGCTAA
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