mRNA_Ecto-sp8_S_contig10321.524.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10321.524.1
Unique NamemRNA_Ecto-sp8_S_contig10321.524.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI)

HSP 1 Score: 766 bits (1978), Expect = 1.310e-270
Identity = 402/432 (93.06%), Postives = 410/432 (94.91%), Query Frame = 1 
Query:    1 ERQRPFEASKSPKSQGYEETVPEGAPGWETATILARGRDSLGYSLSSDRPKLASFARNQASHAAGGGQLQAGGGKPEADLATSAFGSPKEVTGSERLAAGIDRLGWPSREGEGGAPRFGEGGARSAKGWEFETGGGIFDDDDQGLAARKHPARSQATLAPAAAPADGTEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSNSNRYGGSDRSLHAGGQQEEKYESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQAKVGVPGMSAAARAAVGAGVEDGGGLDPGMKRLCMAGQRREAEEARARASRAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGSSGWSE 1296
            ERQRPFEAS SPK QGYEETVP GAPGWETAT LARGRDSLGYSLSSDRPKLAS  RNQASHAAGGGQLQA     EADLATSAFGSPKEVTGSERLAAGIDRLGWPSRE EGGAPRFGEGGARSA+GWEFETGGGIFDD DQGLAARKHP RSQATLAPAAAPAD TE+K PTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWI+YDGRRVPRRSLAPGACYFERSFATHPWVI+HS+SN YG  +RSLHAGGQQEEK ESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQA+VGVPGMSAAARAAVGAGVEDGGGLDPGMKR CMAGQRREAEEARARA+RAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMG SGWSE
Sbjct:  489 ERQRPFEASTSPKWQGYEETVPAGAPGWETATSLARGRDSLGYSLSSDRPKLASSPRNQASHAAGGGQLQAXXXXREADLATSAFGSPKEVTGSERLAAGIDRLGWPSRESEGGAPRFGEGGARSAQGWEFETGGGIFDDSDQGLAARKHPGRSQATLAPAAAPADETEKKLPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWINYDGRRVPRRSLAPGACYFERSFATHPWVIEHSDSNHYG--NRSLHAGGQQEEKRESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEDGGGLDPGMKRQCMAGQRREAEEARARAARAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGLSGWSE 918
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BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE)

HSP 1 Score: 743 bits (1918), Expect = 4.420e-261
Identity = 398/474 (83.97%), Postives = 412/474 (86.92%), Query Frame = 1 
Query:    1 ERQRPFEASKSPKSQGYEETVPEGAPGWETATILARGRDSLGYSLSSDRPKLASFARNQASHAAGGGQLQAGGGKPEADLATSAFGSPKEVTGSERLAAGIDRLGWPSREGEGGAPRFGEGGARSAKGWEFETGGGIFDDDDQGLAARKHPARSQATLAPAAAPADGTEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKV------------------------------------------SWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSNSNRYGGSDRSLHAGGQQEEKYESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQAKVGVPGMSAAARAAVGAGVEDGGGLDPGMKRLCMAGQRREAEEARARASRAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGSSGWSE 1296
            ERQRPFEASKSPKSQGYEE+ PEGA G ET TILAR RDSL YSLSSDRPKLASFARNQASHAAGGGQLQ GGG+PEADLA SAFGSPKEVTGSERLAAGI+RLGWPSREG+GGAPRFGEGGAR+A GWEFETGGGIFDDDDQGLAARKHPAR QATLAPAA PAD  EEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKV                                          SWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHS+SN+ G +DRSLHAGGQQEEK E TGSGAP PL+PSPPREAGDDDDAELCVVRLGD MA+AQFTGSLIWNPTGRTLSITKQA+VGVPGMSAAARAAVGAGVE+GGGLDPGMKRLCMAGQRREAEEARARA+RAVVREEKARVLEE+KAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGS GWSE
Sbjct:  477 ERQRPFEASKSPKSQGYEESEPEGALGRETTTILARSRDSLRYSLSSDRPKLASFARNQASHAAGGGQLQTGGGQPEADLAMSAFGSPKEVTGSERLAAGINRLGWPSREGKGGAPRFGEGGARNAIGWEFETGGGIFDDDDQGLAARKHPARRQATLAPAATPADEAEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVEQPHEGVGNPVRGFGFCWEKEHFVLTPRDTHGVPLIQRWHVVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSDSNQAGSNDRSLHAGGQQEEKCEPTGSGAPVPLKPSPPREAGDDDDAELCVVRLGDTMAVAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEEGGGLDPGMKRLCMAGQRREAEEARARAARAVVREEKARVLEEIKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGS-GWSE 949
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BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot
Match: A0A835ZGW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.290e-14
Identity = 68/223 (30.49%), Postives = 94/223 (42.15%), Query Frame = 1 
Query:  367 ARSAKGWEFETGGGIFD--------------------DDDQGLAARKHPARSQATLAPAAAPADGTEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSNSNRYGGSDRSLHAGGQQEEKYESTGSGAPAPLQPSPPREAGDDDDAELCVVRLG-DAMAL-AQFTGSLIWNPTGRTLSITKQAK 969
            A    GW F TGGGI +                    DDD  +AAR    RS+  +  ++           + PL + +S  D   VF+ F N H +  ++V W+DY G+ VPRR L PG  YFERSFA+HPW++Q    +                     TGSG+                  E   VR G DA+A  A      +W+P  R++S+  QAK
Sbjct:  461 AEQGNGWGFATGGGILESHDAVLSPPPRDAPAGDIDSDDDGQVAARVR--RSEGAVPASSQSPXXXXXXXLSLPLSMGASKADVAPVFLCFSNAHATMKLRVGWLDYGGQNVPRRVLLPGQTYFERSFASHPWLLQAMGPS--------------------GTGSGS------------------ECVAVRCGADAVAAGAGLAFCAMWDPLRRSVSVMPQAK 643
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7E5_ECTSI1.310e-27093.06VHL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVY5_9PHAE4.420e-26183.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGW3_9STRA4.290e-1430.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10321contigEcto-sp8_S_contig10321:3..1778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1299
Hectar predicted targeting categoryother localisation
Exons2
Cds size1299
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.781207-CDS-Ecto-sp8_S_contig10321:2..6111681143130.781207-CDS-Ecto-sp8_S_contig10321:2..611Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10321 3..611 +
1681143130.790922-CDS-Ecto-sp8_S_contig10321:1088..17781681143130.790922-CDS-Ecto-sp8_S_contig10321:1088..1778Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10321 1089..1778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10321.524.1prot_Ecto-sp8_S_contig10321.524.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10321 3..1778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10321.524.1

>prot_Ecto-sp8_S_contig10321.524.1 ID=prot_Ecto-sp8_S_contig10321.524.1|Name=mRNA_Ecto-sp8_S_contig10321.524.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=433bp
ERQRPFEASKSPKSQGYEETVPEGAPGWETATILARGRDSLGYSLSSDRP
KLASFARNQASHAAGGGQLQAGGGKPEADLATSAFGSPKEVTGSERLAAG
IDRLGWPSREGEGGAPRFGEGGARSAKGWEFETGGGIFDDDDQGLAARKH
PARSQATLAPAAAPADGTEEKPPTFPLGLESSAVDDLAVFIWFCNNHESA
VMKVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSNSNRYGGSDR
SLHAGGQQEEKYESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMAL
AQFTGSLIWNPTGRTLSITKQAKVGVPGMSAAARAAVGAGVEDGGGLDPG
MKRLCMAGQRREAEEARARASRAVVREEKARVLEEMKAWRTHPLGGGGLG
AGGGVAEGLGGKLGQGVPNLRVVMMGSSGWSE*
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mRNA from alignment at Ecto-sp8_S_contig10321:3..1778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10321.524.1 ID=mRNA_Ecto-sp8_S_contig10321.524.1|Name=mRNA_Ecto-sp8_S_contig10321.524.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1776bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10321:3..1778+ (Ectocarpus species8 EcLAC_412)
GAAAGGCAGCGACCATTCGAAGCCTCGAAATCGCCAAAGTCACAAGGATA
TGAGGAAACCGTACCAGAAGGAGCTCCCGGGTGGGAGACGGCCACAATTT
TAGCTCGCGGTAGAGACAGTCTCGGGTACTCCTTGTCGAGCGACAGACCG
AAGTTGGCCTCGTTCGCTCGAAACCAAGCGTCGCACGCGGCAGGAGGTGG
CCAGCTGCAGGCAGGTGGAGGGAAGCCTGAAGCCGATCTGGCGACGTCGG
CATTTGGATCCCCGAAAGAAGTCACTGGAAGCGAAAGATTGGCAGCGGGA
ATAGATCGTCTAGGTTGGCCAAGCAGAGAGGGCGAAGGTGGTGCTCCTAG
GTTCGGGGAGGGAGGGGCGAGGAGTGCAAAAGGGTGGGAGTTTGAAACAG
GCGGAGGCATCTTCGACGACGATGACCAGGGGTTAGCCGCGAGGAAACAT
CCAGCAAGGAGCCAGGCCACCCTTGCGCCAGCTGCAGCTCCCGCGGATGG
GACGGAAGAGAAGCCGCCAACGTTTCCCCTGGGGCTCGAGTCATCGGCAG
TGGATGATCTTGCCGTGTTCATCTGGTTCTGCAACAACCACGAGTCTGCG
GTGATGAAGGTGGAGCAACCTCAAGAGGGAGTTGGCAACCCCGTGCGAGG
CTTTGGGTTCTGCTGTGTTCGCGGAACGCAAACAACGATAGATTATTACT
CGTTTAGGATCTGCTCGCAGCTATAACATGTAGCTTCTATTGGAAGCTTT
AGAGCGAGGATATCTGTGCCGTAGCGTGTACACCCTCAAGTTTTGTAGCG
TACACCCTCTACTTTCGGTGGTGCTCGCAGGGGAGAAGGAACACTCCGTG
ATCACGCCCCGGGACATCCACGAGGTCCCACTTATCCAAAGATGGCATGC
GGTATGTACCACAGGGTAGCACCTCGACGACCACACGAAACGGGACCCAG
CAGCTACGACCTTGGTTGTCGAGGGTGGGTCCCCGAGCCGTTCGTCGTCT
TGAACTCGTGCTCCGTGGAACACCAACACAGCCTCAAAATTGACAGCTTT
CGCGCACCGTTTGCGTTCGCCGCTCTCTTTGTCCAGGTATCGTGGATCGA
CTACGACGGAAGGCGCGTTCCGCGGAGATCGCTCGCGCCGGGTGCCTGCT
ACTTCGAGCGTTCCTTCGCCACCCATCCCTGGGTGATCCAGCACAGCAAT
AGCAACCGGTACGGCGGTAGTGACAGAAGCTTGCACGCTGGAGGGCAGCA
AGAAGAAAAGTATGAGTCAACAGGCAGCGGAGCTCCCGCGCCCTTGCAAC
CTTCTCCTCCACGAGAAGCAGGAGACGACGACGACGCGGAACTTTGCGTG
GTACGTCTGGGGGACGCGATGGCCCTCGCCCAGTTCACGGGGTCATTGAT
CTGGAACCCCACGGGCAGAACGCTGTCCATCACCAAGCAGGCGAAGGTTG
GGGTGCCTGGTATGAGCGCTGCGGCGCGCGCTGCCGTAGGCGCCGGCGTT
GAGGACGGCGGCGGGCTCGACCCCGGCATGAAACGGCTGTGCATGGCCGG
GCAGCGGAGGGAGGCCGAGGAGGCCCGCGCTAGGGCATCGAGAGCGGTTG
TACGGGAGGAAAAGGCCAGAGTCTTGGAGGAAATGAAAGCTTGGCGAACG
CACCCGCTTGGCGGGGGAGGGCTTGGTGCGGGTGGTGGTGTGGCAGAAGG
GCTTGGGGGGAAGCTCGGTCAGGGGGTTCCGAATCTTCGCGTTGTTATGA
TGGGGTCGTCGGGTTGGAGTGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10321:3..1778+

>mRNA_Ecto-sp8_S_contig10321.524.1 ID=mRNA_Ecto-sp8_S_contig10321.524.1|Name=mRNA_Ecto-sp8_S_contig10321.524.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1299bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10321:3..1778+ (Ectocarpus species8 EcLAC_412)
GAAAGGCAGCGACCATTCGAAGCCTCGAAATCGCCAAAGTCACAAGGATA
TGAGGAAACCGTACCAGAAGGAGCTCCCGGGTGGGAGACGGCCACAATTT
TAGCTCGCGGTAGAGACAGTCTCGGGTACTCCTTGTCGAGCGACAGACCG
AAGTTGGCCTCGTTCGCTCGAAACCAAGCGTCGCACGCGGCAGGAGGTGG
CCAGCTGCAGGCAGGTGGAGGGAAGCCTGAAGCCGATCTGGCGACGTCGG
CATTTGGATCCCCGAAAGAAGTCACTGGAAGCGAAAGATTGGCAGCGGGA
ATAGATCGTCTAGGTTGGCCAAGCAGAGAGGGCGAAGGTGGTGCTCCTAG
GTTCGGGGAGGGAGGGGCGAGGAGTGCAAAAGGGTGGGAGTTTGAAACAG
GCGGAGGCATCTTCGACGACGATGACCAGGGGTTAGCCGCGAGGAAACAT
CCAGCAAGGAGCCAGGCCACCCTTGCGCCAGCTGCAGCTCCCGCGGATGG
GACGGAAGAGAAGCCGCCAACGTTTCCCCTGGGGCTCGAGTCATCGGCAG
TGGATGATCTTGCCGTGTTCATCTGGTTCTGCAACAACCACGAGTCTGCG
GTGATGAAGGTATCGTGGATCGACTACGACGGAAGGCGCGTTCCGCGGAG
ATCGCTCGCGCCGGGTGCCTGCTACTTCGAGCGTTCCTTCGCCACCCATC
CCTGGGTGATCCAGCACAGCAATAGCAACCGGTACGGCGGTAGTGACAGA
AGCTTGCACGCTGGAGGGCAGCAAGAAGAAAAGTATGAGTCAACAGGCAG
CGGAGCTCCCGCGCCCTTGCAACCTTCTCCTCCACGAGAAGCAGGAGACG
ACGACGACGCGGAACTTTGCGTGGTACGTCTGGGGGACGCGATGGCCCTC
GCCCAGTTCACGGGGTCATTGATCTGGAACCCCACGGGCAGAACGCTGTC
CATCACCAAGCAGGCGAAGGTTGGGGTGCCTGGTATGAGCGCTGCGGCGC
GCGCTGCCGTAGGCGCCGGCGTTGAGGACGGCGGCGGGCTCGACCCCGGC
ATGAAACGGCTGTGCATGGCCGGGCAGCGGAGGGAGGCCGAGGAGGCCCG
CGCTAGGGCATCGAGAGCGGTTGTACGGGAGGAAAAGGCCAGAGTCTTGG
AGGAAATGAAAGCTTGGCGAACGCACCCGCTTGGCGGGGGAGGGCTTGGT
GCGGGTGGTGGTGTGGCAGAAGGGCTTGGGGGGAAGCTCGGTCAGGGGGT
TCCGAATCTTCGCGTTGTTATGATGGGGTCGTCGGGTTGGAGTGAATGA
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