prot_Ecto-sp8_S_contig10321.524.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp8_S_contig10321.524.1
Unique Name	prot_Ecto-sp8_S_contig10321.524.1
Type	polypeptide
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length	433

Homology

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BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI)

HSP 1 Score: 766 bits (1978), Expect = 1.310e-270
Identity = 402/432 (93.06%), Postives = 410/432 (94.91%), Query Frame = 0

Query:    1 ERQRPFEASKSPKSQGYEETVPEGAPGWETATILARGRDSLGYSLSSDRPKLASFARNQASHAAGGGQLQAGGGKPEADLATSAFGSPKEVTGSERLAAGIDRLGWPSREGEGGAPRFGEGGARSAKGWEFETGGGIFDDDDQGLAARKHPARSQATLAPAAAPADGTEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSNSNRYGGSDRSLHAGGQQEEKYESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQAKVGVPGMSAAARAAVGAGVEDGGGLDPGMKRLCMAGQRREAEEARARASRAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGSSGWSE 432
            ERQRPFEAS SPK QGYEETVP GAPGWETAT LARGRDSLGYSLSSDRPKLAS  RNQASHAAGGGQLQA     EADLATSAFGSPKEVTGSERLAAGIDRLGWPSRE EGGAPRFGEGGARSA+GWEFETGGGIFDD DQGLAARKHP RSQATLAPAAAPAD TE+K PTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWI+YDGRRVPRRSLAPGACYFERSFATHPWVI+HS+SN YG  +RSLHAGGQQEEK ESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQA+VGVPGMSAAARAAVGAGVEDGGGLDPGMKR CMAGQRREAEEARARA+RAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMG SGWSE
Sbjct:  489 ERQRPFEASTSPKWQGYEETVPAGAPGWETATSLARGRDSLGYSLSSDRPKLASSPRNQASHAAGGGQLQAXXXXREADLATSAFGSPKEVTGSERLAAGIDRLGWPSRESEGGAPRFGEGGARSAQGWEFETGGGIFDDSDQGLAARKHPGRSQATLAPAAAPADETEKKLPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWINYDGRRVPRRSLAPGACYFERSFATHPWVIEHSDSNHYG--NRSLHAGGQQEEKRESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEDGGGLDPGMKRQCMAGQRREAEEARARAARAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGLSGWSE 918

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BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE)

HSP 1 Score: 743 bits (1918), Expect = 4.420e-261
Identity = 398/474 (83.97%), Postives = 412/474 (86.92%), Query Frame = 0

Query:    1 ERQRPFEASKSPKSQGYEETVPEGAPGWETATILARGRDSLGYSLSSDRPKLASFARNQASHAAGGGQLQAGGGKPEADLATSAFGSPKEVTGSERLAAGIDRLGWPSREGEGGAPRFGEGGARSAKGWEFETGGGIFDDDDQGLAARKHPARSQATLAPAAAPADGTEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKV------------------------------------------SWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSNSNRYGGSDRSLHAGGQQEEKYESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQAKVGVPGMSAAARAAVGAGVEDGGGLDPGMKRLCMAGQRREAEEARARASRAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGSSGWSE 432
            ERQRPFEASKSPKSQGYEE+ PEGA G ET TILAR RDSL YSLSSDRPKLASFARNQASHAAGGGQLQ GGG+PEADLA SAFGSPKEVTGSERLAAGI+RLGWPSREG+GGAPRFGEGGAR+A GWEFETGGGIFDDDDQGLAARKHPAR QATLAPAA PAD  EEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKV                                          SWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHS+SN+ G +DRSLHAGGQQEEK E TGSGAP PL+PSPPREAGDDDDAELCVVRLGD MA+AQFTGSLIWNPTGRTLSITKQA+VGVPGMSAAARAAVGAGVE+GGGLDPGMKRLCMAGQRREAEEARARA+RAVVREEKARVLEE+KAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGS GWSE
Sbjct:  477 ERQRPFEASKSPKSQGYEESEPEGALGRETTTILARSRDSLRYSLSSDRPKLASFARNQASHAAGGGQLQTGGGQPEADLAMSAFGSPKEVTGSERLAAGINRLGWPSREGKGGAPRFGEGGARNAIGWEFETGGGIFDDDDQGLAARKHPARRQATLAPAATPADEAEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVEQPHEGVGNPVRGFGFCWEKEHFVLTPRDTHGVPLIQRWHVVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSDSNQAGSNDRSLHAGGQQEEKCEPTGSGAPVPLKPSPPREAGDDDDAELCVVRLGDTMAVAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEEGGGLDPGMKRLCMAGQRREAEEARARAARAVVREEKARVLEEIKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGS-GWSE 949

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BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot
Match: A0A835ZGW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.290e-14
Identity = 68/223 (30.49%), Postives = 94/223 (42.15%), Query Frame = 0

Query:  123 ARSAKGWEFETGGGIFD--------------------DDDQGLAARKHPARSQATLAPAAAPADGTEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSNSNRYGGSDRSLHAGGQQEEKYESTGSGAPAPLQPSPPREAGDDDDAELCVVRLG-DAMAL-AQFTGSLIWNPTGRTLSITKQAK 323
            A    GW F TGGGI +                    DDD  +AAR    RS+  +  ++           + PL + +S  D   VF+ F N H +  ++V W+DY G+ VPRR L PG  YFERSFA+HPW++Q    +                     TGSG+                  E   VR G DA+A  A      +W+P  R++S+  QAK
Sbjct:  461 AEQGNGWGFATGGGILESHDAVLSPPPRDAPAGDIDSDDDGQVAARVR--RSEGAVPASSQSPXXXXXXXLSLPLSMGASKADVAPVFLCFSNAHATMKLRVGWLDYGGQNVPRRVLLPGQTYFERSFASHPWLLQAMGPS--------------------GTGSGS------------------ECVAVRCGADAVAAGAGLAFCAMWDPLRRSVSVMPQAK 643

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig10321.524.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G7E5_ECTSI	1.310e-270	93.06	VHL domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JVY5_9PHAE	4.420e-261	83.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835ZGW3_9STRA	4.290e-14	30.49	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 360..380
IPR024053	von Hippel-Lindau disease tumour suppressor, beta domain	PFAM	PF01847	VHL	coord: 187..242 e-value: 2.4E-6 score: 27.4
IPR037140	von Hippel-Lindau disease tumour suppressor, beta domain superfamily	GENE3D	2.60.40.780		coord: 175..251 e-value: 9.6E-12 score: 46.9
IPR036208	VHL superfamily	SUPERFAMILY	49468	VHL	coord: 181..243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig10321	contig	Ecto-sp8_S_contig10321:3..1778 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig10321.524.1	mRNA_Ecto-sp8_S_contig10321.524.1	Ectocarpus species8 EcLAC_412	mRNA	Ecto-sp8_S_contig10321 3..1778 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp8_S_contig10321.524.1 ID=prot_Ecto-sp8_S_contig10321.524.1|Name=mRNA_Ecto-sp8_S_contig10321.524.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=433bp
ERQRPFEASKSPKSQGYEETVPEGAPGWETATILARGRDSLGYSLSSDRP
KLASFARNQASHAAGGGQLQAGGGKPEADLATSAFGSPKEVTGSERLAAG
IDRLGWPSREGEGGAPRFGEGGARSAKGWEFETGGGIFDDDDQGLAARKH
PARSQATLAPAAAPADGTEEKPPTFPLGLESSAVDDLAVFIWFCNNHESA
VMKVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSNSNRYGGSDR
SLHAGGQQEEKYESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMAL
AQFTGSLIWNPTGRTLSITKQAKVGVPGMSAAARAAVGAGVEDGGGLDPG
MKRLCMAGQRREAEEARARASRAVVREEKARVLEEMKAWRTHPLGGGGLG
AGGGVAEGLGGKLGQGVPNLRVVMMGSSGWSE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024053	VHL_beta_dom
IPR037140	VHL_beta_dom_sf
IPR036208	VHL_sf