mRNA_Ecto-sp8_S_contig10312.513.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10312.513.1
Unique NamemRNA_Ecto-sp8_S_contig10312.513.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10312.513.1 vs. uniprot
Match: D8LHE3_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 3.790e-17
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:   40 FCFFLQVCGEKERRYCCPRCGKLTCSLPCYKRHKKE 147
            F FFLQVCGEKERRYCCPRCGKLTCSLPCYKRHKKE
Sbjct:    7 FSFFLQVCGEKERRYCCPRCGKLTCSLPCYKRHKKE 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10312.513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHE3_ECTSI3.790e-1797.22HIT-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10312contigEcto-sp8_S_contig10312:6536..6709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score84.7
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D8LHE3
Preferred nameZNHIT6
Model size174
KEGG koko:K14689
KEGG TC2.A.4.3.1,2.A.4.3.4
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000491,GO:0000492,GO:0000902,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006403,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0008152,GO:0009653,GO:0009987,GO:0016043,GO:0016070,GO:0016074,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0048254,GO:0048468,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0051117,GO:0051179,GO:0051259,GO:0065003,GO:0070761,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0120036,GO:0120039,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.Box c d snorna protein
EggNOG OGsKOG2858@1,KOG2858@2759
Cds size174
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.1334572-CDS-Ecto-sp8_S_contig10312:6535..67091681143130.1334572-CDS-Ecto-sp8_S_contig10312:6535..6709Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10312 6536..6709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10312.513.1prot_Ecto-sp8_S_contig10312.513.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10312 6536..6709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10312.513.1

>prot_Ecto-sp8_S_contig10312.513.1 ID=prot_Ecto-sp8_S_contig10312.513.1|Name=mRNA_Ecto-sp8_S_contig10312.513.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
MPVSLPGSNANMVFCFFLQVCGEKERRYCCPRCGKLTCSLPCYKRHKKEV
RRNRERFV
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mRNA from alignment at Ecto-sp8_S_contig10312:6536..6709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10312.513.1 ID=mRNA_Ecto-sp8_S_contig10312.513.1|Name=mRNA_Ecto-sp8_S_contig10312.513.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10312:6536..6709+ (Ectocarpus species8 EcLAC_412)
ATGCCTGTCTCTCTCCCTGGTTCAAATGCTAACATGGTTTTTTGTTTTTT
TTTGCAGGTCTGCGGAGAGAAGGAGCGCCGTTACTGCTGCCCGCGGTGCG
GAAAGCTGACGTGCAGCCTGCCCTGCTACAAGCGGCACAAGAAAGAGGTG
CGGCGCAATAGAGAACGCTTCGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10312:6536..6709+

>mRNA_Ecto-sp8_S_contig10312.513.1 ID=mRNA_Ecto-sp8_S_contig10312.513.1|Name=mRNA_Ecto-sp8_S_contig10312.513.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10312:6536..6709+ (Ectocarpus species8 EcLAC_412)
ATGCCTGTCTCTCTCCCTGGTTCAAATGCTAACATGGTTTTTTGTTTTTT
TTTGCAGGTCTGCGGAGAGAAGGAGCGCCGTTACTGCTGCCCGCGGTGCG
GAAAGCTGACGTGCAGCCTGCCCTGCTACAAGCGGCACAAGAAAGAGGTG
CGGCGCAATAGAGAACGCTTCGTG
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