prot_Ecto-sp8_S_contig10312.513.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10312.513.1
Unique Nameprot_Ecto-sp8_S_contig10312.513.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length58
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10312.513.1 vs. uniprot
Match: D8LHE3_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 3.790e-17
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 
Query:   14 FCFFLQVCGEKERRYCCPRCGKLTCSLPCYKRHKKE 49
            F FFLQVCGEKERRYCCPRCGKLTCSLPCYKRHKKE
Sbjct:    7 FSFFLQVCGEKERRYCCPRCGKLTCSLPCYKRHKKE 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10312.513.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHE3_ECTSI3.790e-1797.22HIT-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.60.190coord: 4..57
e-value: 1.0E-8
score: 36.7
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 16..51
IPR007529Zinc finger, HIT-typePFAMPF04438zf-HITcoord: 14..44
e-value: 9.2E-8
score: 31.8
IPR007529Zinc finger, HIT-typePROSITEPS51083ZF_HITcoord: 18..51
score: 8.963

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10312contigEcto-sp8_S_contig10312:6536..6709 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10312.513.1mRNA_Ecto-sp8_S_contig10312.513.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10312 6536..6709 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10312.513.1 ID=prot_Ecto-sp8_S_contig10312.513.1|Name=mRNA_Ecto-sp8_S_contig10312.513.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
MPVSLPGSNANMVFCFFLQVCGEKERRYCCPRCGKLTCSLPCYKRHKKEV
RRNRERFV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007529Znf_HIT