mRNA_Ecto-sp8_S_contig10307.505.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10307.505.1
Unique NamemRNA_Ecto-sp8_S_contig10307.505.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10307.505.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.130e-7
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:    2 SILPDRLVSNSAHGEGTASITRHDGSKK 85
            SILPDRLVSNSAHGEGTASITRHDGSKK
Sbjct:  894 SILPDRLVSNSAHGEGTASITRHDGSKK 921
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10307.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY89_ECTSI1.130e-7100.00Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10307contigEcto-sp8_S_contig10307:3389..3779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size393
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.6944199-CDS-Ecto-sp8_S_contig10307:3388..37781681143129.6944199-CDS-Ecto-sp8_S_contig10307:3388..3778Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10307 3389..3778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10307.505.1prot_Ecto-sp8_S_contig10307.505.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10307 3389..3778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10307.505.1

>prot_Ecto-sp8_S_contig10307.505.1 ID=prot_Ecto-sp8_S_contig10307.505.1|Name=mRNA_Ecto-sp8_S_contig10307.505.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
VDTARPPGFKLRARRGYGIYHKTRRKQEGTTYHCMVIFVVGCGRSLANNV
GLAAAVGYSFLVVDRYVAAVLALLPTPHMLPSRDKIDDNRILSHPPNLNV
FRRRRRWWWMERRPLETAGTRSTLPWARSP
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mRNA from alignment at Ecto-sp8_S_contig10307:3389..3779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10307.505.1 ID=mRNA_Ecto-sp8_S_contig10307.505.1|Name=mRNA_Ecto-sp8_S_contig10307.505.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=391bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10307:3389..3779+ (Ectocarpus species8 EcLAC_412)
GTCGATACTGCCCGACCGCCTGGTTTCAAACTCCGCGCACGGAGAGGGTA
CGGCATCTATCACAAGACACGACGGAAGCAAGAAGGTACAACCTACCACT
GTATGGTGATTTTTGTTGTTGGCTGTGGCCGCTCCCTTGCAAACAATGTT
GGTTTGGCTGCCGCTGTTGGATATTCCTTTCTTGTCGTCGATCGATACGT
GGCTGCTGTGCTGGCGTTGCTCCCAACCCCTCACATGCTACCGTCGCGGG
ATAAGATTGATGACAACCGGATTCTTTCCCATCCCCCGAATTTGAACGTC
TTCAGGAGGCGTCGGCGGTGGTGGTGGATGGAGCGACGTCCGCTTGAAAC
CGCCGGCACCCGGAGCACGCTACCGTGGGCACGAAGCCCTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10307:3389..3779+

>mRNA_Ecto-sp8_S_contig10307.505.1 ID=mRNA_Ecto-sp8_S_contig10307.505.1|Name=mRNA_Ecto-sp8_S_contig10307.505.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10307:3389..3779+ (Ectocarpus species8 EcLAC_412)
GTCGATACTGCCCGACCGCCTGGTTTCAAACTCCGCGCACGGAGAGGGTA
CGGCATCTATCACAAGACACGACGGAAGCAAGAAGGTACAACCTACCACT
GTATGGTGATTTTTGTTGTTGGCTGTGGCCGCTCCCTTGCAAACAATGTT
GGTTTGGCTGCCGCTGTTGGATATTCCTTTCTTGTCGTCGATCGATACGT
GGCTGCTGTGCTGGCGTTGCTCCCAACCCCTCACATGCTACCGTCGCGGG
ATAAGATTGATGACAACCGGATTCTTTCCCATCCCCCGAATTTGAACGTC
TTCAGGAGGCGTCGGCGGTGGTGGTGGATGGAGCGACGTCCGCTTGAAAC
CGCCGGCACCCGGAGCACGCTACCGTGGGCACGAAGCCCT
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