prot_Ecto-sp8_S_contig99331.31794.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig99331.31794.1
Unique Nameprot_Ecto-sp8_S_contig99331.31794.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length48
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99331.31794.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.860e-24
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:    1 MSLDARLACVVSDLDATHVFVKKDSIKEIQRELEQLHEKNVYVRPRT 47
            MSLDARLACVVSDLDATHVFVKKDS+KEIQRELEQLHEKNVYVRPRT
Sbjct:   24 MSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99331.31794.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G710_ECTSI2.860e-2497.87General transcription and DNA repair factor IIH su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035935TFB5-like superfamilyGENE3D3.30.70.1220coord: 1..44
e-value: 5.3E-10
score: 40.7
IPR035935TFB5-like superfamilySUPERFAMILY142897TFB5-likecoord: 10..44
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 2..43
e-value: 1.7E-10
score: 40.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99331contigEcto-sp8_S_contig99331:26..534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99331.31794.1mRNA_Ecto-sp8_S_contig99331.31794.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig99331 2..534 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig99331.31794.1 ID=prot_Ecto-sp8_S_contig99331.31794.1|Name=mRNA_Ecto-sp8_S_contig99331.31794.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
MSLDARLACVVSDLDATHVFVKKDSIKEIQRELEQLHEKNVYVRPRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035935TFB5-like_sf
IPR009400TFIIH_TTDA/Tfb5