prot_Ecto-sp8_S_contig99052.31750.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig99052.31750.1
Unique Nameprot_Ecto-sp8_S_contig99052.31750.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length48
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99052.31750.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.930e-15
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 0 
Query:    1 MAVLSACSKAGRWESALSVLREMDRAGITPETVAFNTVLAGTSLRA 46
            MAVLSACSKAGRW SALSVLREMDRAG+TPETVAFNTVLA    RA
Sbjct:  497 MAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRA 542
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BLAST of mRNA_Ecto-sp8_S_contig99052.31750.1 vs. uniprot
Match: A0A6H5JAX5_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX5_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 3.290e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 0 
Query:    3 VLSACSKAGRWESALSVLREMDRAGITPETVAFNTVLAGTSLRAKG 48
            V+ AC +AG+W+ AL VLREM R G+TP+   ++TV++   L + G
Sbjct:  434 VIMACRRAGQWQKALEVLREMPRVGLTPDIFCYDTVISVACLSSVG 479
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99052.31750.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLG9_ECTSI2.930e-1586.96PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JAX5_9PHAE3.290e-545.65PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 2..41
e-value: 1.4E-7
score: 31.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 2..30
e-value: 2.5E-8
score: 31.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..30
score: 10.731
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..47
e-value: 1.0E-10
score: 43.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99052contigEcto-sp8_S_contig99052:255..398 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99052.31750.1mRNA_Ecto-sp8_S_contig99052.31750.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig99052 237..398 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig99052.31750.1 ID=prot_Ecto-sp8_S_contig99052.31750.1|Name=mRNA_Ecto-sp8_S_contig99052.31750.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
MAVLSACSKAGRWESALSVLREMDRAGITPETVAFNTVLAGTSLRAKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf