mRNA_Ecto-sp8_S_contig99052.31750.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99052.31750.1
Unique NamemRNA_Ecto-sp8_S_contig99052.31750.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99052.31750.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 9.540e-20
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 LDHSSFMAVLSACSKAGRWESALSVLREMDRAGITPETVAFNTVLAGTSLRA 156
            LDHSSFMAVLSACSKAGRW SALSVLREMDRAG+TPETVAFNTVLA    RA
Sbjct:  491 LDHSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRA 542
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BLAST of mRNA_Ecto-sp8_S_contig99052.31750.1 vs. uniprot
Match: A0A6H5JAX5_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX5_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.670e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   25 VLSACSKAGRWESALSVLREMDRAGITPETVAFNTVLAGTSLRAKG 162
            V+ AC +AG+W+ AL VLREM R G+TP+   ++TV++   L + G
Sbjct:  434 VIMACRRAGQWQKALEVLREMPRVGLTPDIFCYDTVISVACLSSVG 479
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99052.31750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLG9_ECTSI9.540e-2088.46PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JAX5_9PHAE1.670e-545.65PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99052contigEcto-sp8_S_contig99052:237..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score77.0
Seed ortholog evalue2.6e-12
Seed eggNOG ortholog2880.D8LLG9
Model size162
KEGG koko:K17710
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.1492543-UTR-Ecto-sp8_S_contig99052:236..2541681145359.1492543-UTR-Ecto-sp8_S_contig99052:236..254Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99052 237..254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145359.1721668-CDS-Ecto-sp8_S_contig99052:254..3981681145359.1721668-CDS-Ecto-sp8_S_contig99052:254..398Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99052 255..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99052.31750.1prot_Ecto-sp8_S_contig99052.31750.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99052 255..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99052.31750.1

>prot_Ecto-sp8_S_contig99052.31750.1 ID=prot_Ecto-sp8_S_contig99052.31750.1|Name=mRNA_Ecto-sp8_S_contig99052.31750.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
MAVLSACSKAGRWESALSVLREMDRAGITPETVAFNTVLAGTSLRAKG
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mRNA from alignment at Ecto-sp8_S_contig99052:237..398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99052.31750.1 ID=mRNA_Ecto-sp8_S_contig99052.31750.1|Name=mRNA_Ecto-sp8_S_contig99052.31750.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99052:237..398+ (Ectocarpus species8 EcLAC_412)
CTGGACCACTCGTCGTTCATGGCCGTACTGTCGGCGTGCTCGAAGGCGGG
GAGGTGGGAGTCGGCGCTGTCGGTGCTGCGAGAGATGGACCGCGCCGGGA
TTACCCCGGAGACCGTCGCGTTCAACACGGTTCTCGCGGGTACGTCGCTG
CGAGCGAAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99052:237..398+

>mRNA_Ecto-sp8_S_contig99052.31750.1 ID=mRNA_Ecto-sp8_S_contig99052.31750.1|Name=mRNA_Ecto-sp8_S_contig99052.31750.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99052:237..398+ (Ectocarpus species8 EcLAC_412)
ATGGCCGTACTGTCGGCGTGCTCGAAGGCGGGGAGGTGGGAGTCGGCGCT
GTCGGTGCTGCGAGAGATGGACCGCGCCGGGATTACCCCGGAGACCGTCG
CGTTCAACACGGTTCTCGCGGGTACGTCGCTGCGAGCGAAGGGG
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