prot_Ecto-sp8_S_contig9891.31726.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9891.31726.1
Unique Nameprot_Ecto-sp8_S_contig9891.31726.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length302
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9891.31726.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 6.230e-139
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 0 
Query:    1 MLLSTTGVGNGHESGNSGYDDGTLAVWHPQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFDRLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPGVIGQNLLSLKSLSLSSNALEKIPDGLCDLTAL 214
            MLLSTTGVGNGHESGNSGYDDGTLAVWHPQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFD+LLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPG IGQNLLSLKSLSLSSNALE+IPDGLCDLTAL
Sbjct:    1 MLLSTTGVGNGHESGNSGYDDGTLAVWHPQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFDKLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPGAIGQNLLSLKSLSLSSNALEEIPDGLCDLTAL 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9891.31726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMJ1_ECTSI6.230e-13998.60Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 211..233
e-value: 0.71
score: 18.9
coord: 257..280
e-value: 30.0
score: 9.3
coord: 188..210
e-value: 3.3
score: 16.7
coord: 234..256
e-value: 2.0
score: 17.4
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 169..224
e-value: 6.7E-9
score: 35.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 213..235
score: 6.849
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 190..212
score: 7.727
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 236..257
score: 7.111
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 101..283
e-value: 3.7E-27
score: 96.7
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 164..282
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 150..281

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9891contigEcto-sp8_S_contig9891:1898..5856 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9891.31726.1mRNA_Ecto-sp8_S_contig9891.31726.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9891 1803..7051 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9891.31726.1 ID=prot_Ecto-sp8_S_contig9891.31726.1|Name=mRNA_Ecto-sp8_S_contig9891.31726.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=302bp
MLLSTTGVGNGHESGNSGYDDGTLAVWHPQAFSKHVDPETGYWFYENLAT
GERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRR
VQFDRLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSV
SESHIFGFPERNGGTKIVNLRLVGLGLTEVPGVIGQNLLSLKSLSLSSNA
LEKIPDGLCDLTALTELNLVRNKLSDLPNRFGNLLRLRNLSLAGNRLETI
PPSFGNLLRLDQVVLDCNALRRLPETLGRMKSRPSTTVYGPSPRISEIPG
H*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf