mRNA_Ecto-sp8_S_contig9891.31726.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9891.31726.1
Unique NamemRNA_Ecto-sp8_S_contig9891.31726.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9891.31726.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 7.880e-136
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 3
Query:   96 MLLSTTGVGNGHESGNSGYDDGTLAVWHPQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFDRLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPGVIGQNLLSLKSLSLSSNALEKIPDGLCDLTAL 737
            MLLSTTGVGNGHESGNSGYDDGTLAVWHPQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFD+LLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPG IGQNLLSLKSLSLSSNALE+IPDGLCDLTAL
Sbjct:    1 MLLSTTGVGNGHESGNSGYDDGTLAVWHPQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFDKLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPGAIGQNLLSLKSLSLSSNALEEIPDGLCDLTAL 214          
BLAST of mRNA_Ecto-sp8_S_contig9891.31726.1 vs. uniprot
Match: A0A6H5KAI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI0_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.880e-62
Identity = 160/167 (95.81%), Postives = 163/167 (97.60%), Query Frame = 2
Query:  935 EISAVNNGLRSLPSDIGDSRSLTALHLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNDMVYPPKEVILQGCDRVRAWCYRRMHDRVIARQHTIVMAVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALER 1435
            +ISAVNNGLRSLPSDIGDSRSLTALHL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNDMVYPPKE+ILQGCDRVRAWC+RRMHDRV ARQHTIVM VQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALER
Sbjct:    6 KISAVNNGLRSLPSDIGDSRSLTALHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNDMVYPPKEIILQGCDRVRAWCHRRMHDRVSARQHTIVMTVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALER 172          
BLAST of mRNA_Ecto-sp8_S_contig9891.31726.1 vs. uniprot
Match: A0A7S4A2F7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A2F7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.510e-6
Identity = 30/90 (33.33%), Postives = 49/90 (54.44%), Query Frame = 2
Query: 1166 MVYPPKEVILQGCDRVRAWCYRRMHDRVIARQHTIVMAVQDILKQIHE--RGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPAL 1429
            M YP  + +LQG + VR W  +R    + AR+H +V  +QD ++Q  E    + H  +FE     G+      ++ +V+++FWD MLP L
Sbjct:  463 MKYPTPDTLLQGAEAVRNWFRKRQKQALFARKHRVVATMQDFMEQCGEVRPSIAHQGYFE----AGVERSGAVWFQVVWDKFWDEMLPGL 548          
BLAST of mRNA_Ecto-sp8_S_contig9891.31726.1 vs. uniprot
Match: A0A7S3MDR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDR4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.300e-5
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 2
Query: 1166 MVYPPKEVILQGCDRVRAWCYRRMHDRVIARQHTIVMAVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALER 1435
            M+ PP EV+ QG   V A+      +  +AR   +V+A Q++LKQI ER     A+FEPD +   ++  D ++AL     W  +LP L+R
Sbjct:  218 MLDPPPEVMGQGGPAVVAYLKAIYLNDKVARMREVVLATQNVLKQIQERDFADSAYFEPDYQR-TDKDLDRWFALQLPYLWKDLLPQLKR 306          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9891.31726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMJ1_ECTSI7.880e-13698.60Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KAI0_9PHAE1.880e-6295.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4A2F7_9STRA1.510e-633.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3MDR4_9STRA3.300e-536.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9891contigEcto-sp8_S_contig9891:1803..7051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score422.2
Seed ortholog evalue2.1e-115
Seed eggNOG ortholog2880.D8LMJ1
Preferred nameLRCH1
Model size1435
KEGG koko:K09506,ko:K10641
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002685,GO:0002686,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0016020,GO:0023052,GO:0030334,GO:0030336,GO:0032879,GO:0034097,GO:0034260,GO:0040012,GO:0040013,GO:0042221,GO:0043086,GO:0043087,GO:0044092,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051270,GO:0051271,GO:0051336,GO:0051346,GO:0051716,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:1990868,GO:1990869,GO:2000145,GO:2000146,GO:2000401,GO:2000402,GO:2000404,GO:2000405
Exons9
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
Cds size906
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03110,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9891.31726.1prot_Ecto-sp8_S_contig9891.31726.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9891 1898..5856 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.3033748-UTR-Ecto-sp8_S_contig9891:1802..18971681145357.3033748-UTR-Ecto-sp8_S_contig9891:1802..1897Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9891 1803..1897 +
1681145357.4202006-UTR-Ecto-sp8_S_contig9891:5856..59581681145357.4202006-UTR-Ecto-sp8_S_contig9891:5856..5958Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9891 5857..5958 +
1681145357.4310365-UTR-Ecto-sp8_S_contig9891:6239..64361681145357.4310365-UTR-Ecto-sp8_S_contig9891:6239..6436Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9891 6240..6436 +
1681145357.4456234-UTR-Ecto-sp8_S_contig9891:6916..70511681145357.4456234-UTR-Ecto-sp8_S_contig9891:6916..7051Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9891 6917..7051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145357.3171651-CDS-Ecto-sp8_S_contig9891:1897..19871681145357.3171651-CDS-Ecto-sp8_S_contig9891:1897..1987Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9891 1898..1987 +
1681145357.3294566-CDS-Ecto-sp8_S_contig9891:2447..25961681145357.3294566-CDS-Ecto-sp8_S_contig9891:2447..2596Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9891 2448..2596 +
1681145357.3415544-CDS-Ecto-sp8_S_contig9891:2857..31161681145357.3415544-CDS-Ecto-sp8_S_contig9891:2857..3116Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9891 2858..3116 +
1681145357.371993-CDS-Ecto-sp8_S_contig9891:3536..37271681145357.371993-CDS-Ecto-sp8_S_contig9891:3536..3727Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9891 3537..3727 +
1681145357.3901782-CDS-Ecto-sp8_S_contig9891:4413..45661681145357.3901782-CDS-Ecto-sp8_S_contig9891:4413..4566Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9891 4414..4566 +
1681145357.4006867-CDS-Ecto-sp8_S_contig9891:5135..51911681145357.4006867-CDS-Ecto-sp8_S_contig9891:5135..5191Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9891 5136..5191 +
1681145357.4101982-CDS-Ecto-sp8_S_contig9891:5848..58561681145357.4101982-CDS-Ecto-sp8_S_contig9891:5848..5856Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9891 5849..5856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9891.31726.1

>prot_Ecto-sp8_S_contig9891.31726.1 ID=prot_Ecto-sp8_S_contig9891.31726.1|Name=mRNA_Ecto-sp8_S_contig9891.31726.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=302bp
MLLSTTGVGNGHESGNSGYDDGTLAVWHPQAFSKHVDPETGYWFYENLAT
GERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRR
VQFDRLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSV
SESHIFGFPERNGGTKIVNLRLVGLGLTEVPGVIGQNLLSLKSLSLSSNA
LEKIPDGLCDLTALTELNLVRNKLSDLPNRFGNLLRLRNLSLAGNRLETI
PPSFGNLLRLDQVVLDCNALRRLPETLGRMKSRPSTTVYGPSPRISEIPG
H*
back to top

mRNA from alignment at Ecto-sp8_S_contig9891:1803..7051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9891.31726.1 ID=mRNA_Ecto-sp8_S_contig9891.31726.1|Name=mRNA_Ecto-sp8_S_contig9891.31726.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5249bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9891:1803..7051+ (Ectocarpus species8 EcLAC_412)
TGGGCGTCTGCTGTAGGTCAGCATTGCGGGGAAGCAACCCCCAAGGCGAG GGAGGCGCTCACACCCAGGACCTGCTGCAGTGCGACAACAAGAGGATGTT GCTGTCCACCACAGGTGTGGGCAACGGCCACGAATCGGGGAACTCGGGAT ACGATGACGGGACCTTAGCAGTGTGGCACCCGCAGGTGAGGCCTCAGTGT ACCCAGTGAACACACAGCGTACCTGCTGTAGTACCTGCTGTAGTTCAAGC TGTGTACCGCATGCAATTTGCAATGTTTTTTGCCAGCATGCATCTTTCGT GAAAGGGAAATATCTGGACGTGTGTGAGAGCAGCAAACGACAGGATGGCC TGGGTATCAACTTCGACGATAGCAGCAGCGGTATGACATGTAGACTGCTG TACTGCTGTCGACTTCTTAGCCGATTTCTCCGCACAGATTCAGAGGAGAT CTCCGTTGTTCGCTGTTCCCAAGTTTGCTGCATAGTCTAGACATTCCCCA TTGGACGCTCCCCGGAGGAAGCATCGACCCTGAGCAACTCTATGTATGTC ATCAGAAGATGATATCAATACGGACAGGGCTCAATGGAAATCCAACCTAC ATGTACGCCCTGTGACACGCCACAACAAATTTTATCTCACTGTAGGCGTT CAGCAAACACGTCGATCCGGAAACCGGGTACTGGTTCTATGAAAACCTCG CCACGGGAGAGCGGCATTGGGATCGTCCCCTGGAGGGAGTGGCGCCTCTC CGGCCGAAGTCTCCACGCCCGGACGAGAAACTTGTGGACGATGCGTGAGT CGGTTTTTGCATAGTACATTTAGTCCAATGGCAGGGGTGAGGGAGCGTAA GTACTGATGCTGCAAGTCTCGAGCTCGTCCGTCGAAAAGTGGAGATTTTT GAGAGCGTGGTGTTTCGAAGGGCGTTAACTGGTAACCTTGAACCTATTCC CGAATGCACCCTGAGCTTCACCAAGAAGAGCTTCAACAATCTGCTATTTC GCTTCCCTCTCATGCGCCCGTCCCACAATTCCAACCCTTGCTGGCCGACC ATTAGACGACACAAGCGGCAACGATCGGAGCGGGAGAGCCGTCGAAAGGA CATGGCGATTCGACGGGTGCAGTTTGACAGGCTTCTGCTGGAGGAGGGGA AGAGCGCCGAAATTAAGGAAGCCGAAAGAGTGCAAGGTCTATGGGATGAG GCCGAGCAGCACGCCGCCAGGAAAGAGGGCGATTTCTCGCTGGCTTGGAA GCAAGTCCCGAGCGTTTCGGAGAGCCATATATTCGGGTTTCCCGAAAGGA ACGGGGGTACGAAGGTGAGAGGGGTGGGGGGAGTAGTTCCGGCGGGCATG TGGAGTGAGTGCCCGTGTGCACATATTTCGGCACGGCATGACACACCTTG TGTCGTCATTGTCCTCGTTGAGCTAAGTTTCGCATGTTAGGAAGATCATT TTTTCGGCTTTGTGCAGAAGACCACGAAAGGAGTGTGGGATGAAAAGGGA TACACCTGGAATGCATGTACGTTTAGGTAATTGGTTTGCTGTATTCCCTA TCTAGCGGTTGATATAGACCGGGTAGCCCAATTCGATTGCGCCACCTATG TCCGTTGCTCTTTTGCTTTGGGTCATCGCGTCTGATAACATATTTTCGAG TTCCAGACAATCACCATCAATTATCTACTTCAATATATATGCATATTCGC CCCTACATTTTCACGCCTACGCGCGTGTCTCTAGATTGTTAATCTCCGGC TGGTGGGTCTCGGGCTGACGGAGGTTCCAGGGGTCATCGGCCAGAACCTC TTATCGTTGAAATCTCTTTCTCTGTCCAGCAATGCTCTCGAGAAGATCCC CGATGGGCTGTGCGATCTGACGGCATTGACCGAGCTTAACTTGGTTAGAA ACAAACTCAGCGACTTACCGAACAGGTGAGAAAAGTGTACAGGTCTACGT CGGTTGCAGGGCCGCCGTCTTCCAGTTGAACATAGGAGTAGGAAGCATTT CACCCATTTCGCTTCTTTTTCGAGATTCAAAGCAGAACAAATGCCATGTG CTGGGAAAGGTGGGATGAGTGTGTGCTCGCGTAGCTTGGCAAGTTTCTTG ATGTAAAACGCCGTTGACCCGGTTTAAATACCGGGGACAGCTTCATCAAG CTACTTTCAAATGAAAATGATCCGCTTTAGCTCAAAACAATAACTTAAGT GGCTGCGCAGGGGGGGGGGTGAATTGTAGAGGTGTGGAACATGAGAGTTT CGTATCGTAGGACGTGTACAAGATCTAGCATGTGTATTGAACCCAATATG GGCGAGGGCTCGTATGCAACCTGCAATCCAACCGTGTATTTCTCATGAAA TGGAACATCGGGTTATCTCCTGTATGCTGGCACCAGGAACTGCGACACAA ATGTATCTAGTCGCATCTGTAACCGGATACCACACGTCCAGCTTGAAGTC TTAGACCAAGCCCACGCTAGGCCATTCTTGTCGGGCCTGCTGATCGTTGC CCCTGGGATCCAAGCGTCTGGGCTTCCTAATGGTTGAATGGTCTATACAT GTTCGTCCCACGTGCTGTGTTACTTCTTTCTATGGGCTGTGCGTGTTGAT CTGGAACTTAGGTTCGGTAATTTGCTGCGGCTGAGAAATCTGTCACTGGC CGGAAATCGGCTAGAAACGATCCCTCCTTCATTTGGAAACCTCCTCCGCC TGGATCAAGTGGTGCTGGACTGCAACGCCTTGCGCAGACTGCCGGAGACT TTGGGGAGAATGAAGTGCCGATGGNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNCTGACCAAGATCTCGGCCGTCAACAA CGGTCTACGGTCCCTCCCCTCGGATATCGGAGATTCCAGGTGTGTTACAC ACGACGTTCGGTGCCGACCGCTATCTCACTCTGTTCGGCCTGTAAAAACA TCCTCCTTGCGACCGATCAGCTGGAGAAGAGGGGCTTCCACCCAACGAGA GAGCTGGTATATCCAGCAACCATGAATTCCATCCCGATCGCGTACCCTTT CGGAGCACTTTCTTGCCACCCACATCGACCTGAAGTGCTGTCGGTCCACC CTGGTGTGTTTTGAGTTCAGTTGAATACATACTCCCATTTCCAGCAGTAG TTTTGTCCCACAAAGCTCTGTACGGTGATTGTCTTTAGACGATGGCCAAG AATCTGAGTTCAATAGCGAAACCTACTCGCGGTTGCATGAACTTCACACG GCGAAAAGTGGTTTACTTTATAGACGATTGCCTTCCGCTGCTTTTGTTGA CATGGGCACTTGATTCGCCGGACAGAACTCAATTCTGTGGCGTCGCCTCT TCGCTAGTGATGACGCGCGTTGTCCACCCGGCATCAAAGGTGACTGGGCA ATAATAAGTTGCGCCGGATTGATCATGTAGAGAATTATGCACTGTTATTG CGGAACAACGTGTCGCCATTTTGACTTTCTTTTCCCTCAGGAACCAAAAC GAAACACTCAAACAGTGCCGATGGATTCTCCCTCCCCCTCTGGCAGGTCA CTAACGGCGCTCCACCTGGCGTCAAACAGACTGAATCAACTGCCGGATAG CATCTGCCGACTCAAGACTCTGAAAGTCTTGTGGCTCGACCACAACTACA TTGCAGGTACGTGGTTGAGCCTACTCCGTCGATGCACAACACTTGCTCTA CCGTTTGCTGGATTTTCCGTTTGGTGTGTGAAGTTTTCGCACTACGCGAC GTTCTCTCCTACGCCTGCCTGGTCGAGCATGCATCTGCGCTAAGTAACTC AAGTATGGGTACACCACCCGGCGGCAATTGCTAGTGCAAATCATACCTCT CTTGTGGACCTTTTGGTGGCTGACTACAACTCAAGAGATCAAACGCCCCA ACACACGCGGCGTTTCATGTGTCCGTCTGCCACGCAGGCTTGCCGATGAT GTTTCACCAGCTGGGAGGGCTGCAACAGCTGATGCTCGAGCAAAACGACA TGGTGTATCCCCCCAAGGAGGTCATCCTGCAGGGCTGCGATCGGGTCCGC GCGTGGTGCTACCGCCGAATGCATGACCGCGTCATTGCGAGGCAGCACAC TATCGTTATGGCCGTCCAGGATATCCTCAAGCAGGTAAATTGGCTGTGGT GCGCGAATGTGGCATAGAGCCGGCGCTTTGGTGGGAAACCCCAACCCTTG ACCCTTCCTTCGTGTTGTGAAGCCGATGGAAAGTACTTCCTGTACAATAG TATTGTTGAACTCAGGGCGGCCCTCGCCTTGATGTCTCTTTCCAACTGCT GCGGGAAAAGTCCACCTTATTTTGCTAGGATCACTTGGTTCTGTAGTGCC TCGGCACTGTCGAATTCTGTACGGGGCTCTAAATATCGCGTACAATACTC CGATTCGAAACAACCGAGAATTTGGTTCATTTCGGCACGATCGAGATACC GACGGGCATATCGTTATCTTTCTGACCAAGCACGTTACTTCCGGCAGGGT TAGGCGCCACCAGTGGTTGTTTGTCGTCGTGGTTGTTGTTGTAGCTGCTG CTGCTGCTGCTGCTGCTGATGTTGTTGTTGAAGTGCCACTTGACGAAAAC ATTATCACCCTCAGATCCATGAGCGGGGCTTAGGCCACCCTGCTTTCTTT GAGCCGGATGTCGAGGTCGGGATGAACGAAGGCACCGACCACTTCTACGC TCTCGTCTACGAGCGGTTCTGGGACACAATGCTACCCGCCCTCGAGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9891:1803..7051+

>mRNA_Ecto-sp8_S_contig9891.31726.1 ID=mRNA_Ecto-sp8_S_contig9891.31726.1|Name=mRNA_Ecto-sp8_S_contig9891.31726.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9891:1803..7051+ (Ectocarpus species8 EcLAC_412)
ATGTTGCTGTCCACCACAGGTGTGGGCAACGGCCACGAATCGGGGAACTC
GGGATACGATGACGGGACCTTAGCAGTGTGGCACCCGCAGGCGTTCAGCA
AACACGTCGATCCGGAAACCGGGTACTGGTTCTATGAAAACCTCGCCACG
GGAGAGCGGCATTGGGATCGTCCCCTGGAGGGAGTGGCGCCTCTCCGGCC
GAAGTCTCCACGCCCGGACGAGAAACTTGTGGACGATGCACGACACAAGC
GGCAACGATCGGAGCGGGAGAGCCGTCGAAAGGACATGGCGATTCGACGG
GTGCAGTTTGACAGGCTTCTGCTGGAGGAGGGGAAGAGCGCCGAAATTAA
GGAAGCCGAAAGAGTGCAAGGTCTATGGGATGAGGCCGAGCAGCACGCCG
CCAGGAAAGAGGGCGATTTCTCGCTGGCTTGGAAGCAAGTCCCGAGCGTT
TCGGAGAGCCATATATTCGGGTTTCCCGAAAGGAACGGGGGTACGAAGAT
TGTTAATCTCCGGCTGGTGGGTCTCGGGCTGACGGAGGTTCCAGGGGTCA
TCGGCCAGAACCTCTTATCGTTGAAATCTCTTTCTCTGTCCAGCAATGCT
CTCGAGAAGATCCCCGATGGGCTGTGCGATCTGACGGCATTGACCGAGCT
TAACTTGGTTAGAAACAAACTCAGCGACTTACCGAACAGGTTCGGTAATT
TGCTGCGGCTGAGAAATCTGTCACTGGCCGGAAATCGGCTAGAAACGATC
CCTCCTTCATTTGGAAACCTCCTCCGCCTGGATCAAGTGGTGCTGGACTG
CAACGCCTTGCGCAGACTGCCGGAGACTTTGGGGAGAATGAAATCTCGGC
CGTCAACAACGGTCTACGGTCCCTCCCCTCGGATATCGGAGATTCCAGGT
CACTAA
back to top