prot_Ecto-sp8_S_contig9847.31663.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9847.31663.1
Unique Nameprot_Ecto-sp8_S_contig9847.31663.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length381
Homology
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE)

HSP 1 Score: 451 bits (1161), Expect = 3.490e-149
Identity = 309/384 (80.47%), Postives = 312/384 (81.25%), Query Frame = 0
Query:    1 MVLSRRRLTAVCVVGAMCASAPPRTQGFAPPGSFGRAHGAGDSFYCAERRLAATSLGESTSAASTPGRRERRAAAAVSRCSMASSGRKAAARPGVAARSGAXXXXXXATRKRGRDRVPPSSSSAGVAVKDRAATDVGAVDKQSRARGTGSQATAQTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPSKDVSPSVPAVTVSAASSSSLSSS---DANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            MVL RRRLTAVCVVGAMCASAPPRTQGFAPP SFGR HGAGDSF+CAERRLAATSLGESTSAAS PGR                                 XXXXXX  RKRGRDRVP SSSSAG AVKDRAATDVGAVDKQ RARG GSQA A T A   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          VAPPSK+VSPSVPA TVSA            DANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYA+WWIKKSILTGIANQ
Sbjct:    1 MVLIRRRLTAVCVVGAMCASAPPRTQGFAPPASFGRTHGAGDSFHCAERRLAATSLGESTSAASAPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGRDRVPQSSSSAGAAVKDRAATDVGAVDKQLRARGAGSQARAPTVAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKADTAGG-VAPPSKEVSPSVPAKTVSAMXXXXXXXXXXXDANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYAQWWIKKSILTGIANQ 383          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 5.010e-43
Identity = 84/144 (58.33%), Postives = 109/144 (75.69%), Query Frame = 0
Query:  238 LNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            L  Y +T+ K+ LLKP EE+VLGRQIQ+G+  E  RD L+   G  PS EEWA  L + ++EL++EL+ A +AK  M++ANLRLVVS+A+ YR + L+F DLIQEGT GLVKA EKF+PE GF+F TYA WWIK+SI+ GIA+Q
Sbjct:   51 LAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQ 194          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.540e-42
Identity = 83/144 (57.64%), Postives = 109/144 (75.69%), Query Frame = 0
Query:  238 LNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            L  Y +T+ K+ LLKP EE+VLGRQIQ+G+  E  RD L+   G  P+ EEWA  L + ++EL++EL+ A +AK  M++ANLRLVVS+A+ YR + L+F DLIQEGT GLVKA EKF+PE GF+F TYA WWIK+SI+ GIA+Q
Sbjct:  181 LAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPTEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQ 324          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.850e-37
Identity = 82/164 (50.00%), Postives = 114/164 (69.51%), Query Frame = 0
Query:  218 PAVTVSAASSSSLSSSDANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            P+   SAA SSS      N L  +FK++ +  LL+ +EEV+L R++Q  +  E VRD L+   G  P+ EEWAS++ +  DEL R+L     AK+ MIS+NLRLV+S+A+ Y+ RGLA  DLIQEG++GLV+A EKF+PE GF+F TY+ WWIK++IL  IA+Q
Sbjct:  146 PSTAASAAGSSS------NELGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQ 303          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.310e-36
Identity = 76/151 (50.33%), Postives = 100/151 (66.23%), Query Frame = 0
Query:  231 SSSDANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            SS   + L   FK +  I LLKP+EE+ L RQI+ G++ E  R+ L       PS  EWA+ + + +D L   +  +  AK  MISANLRL VS+A+ YR RGLA PDLIQEG+ GL+KA E+F+PE GF+F TYA WWIK+SI+  IA+Q
Sbjct:   10 SSGQPSQLQHLFKRMTSIDLLKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSARAKSTMISANLRLAVSIAKRYRRRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQ 160          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: A0A2P7MXF5_9CYAN (RNA polymerase sigma factor SigA n=3 Tax=Cyanobium TaxID=167375 RepID=A0A2P7MXF5_9CYAN)

HSP 1 Score: 141 bits (355), Expect = 3.410e-34
Identity = 67/144 (46.53%), Postives = 99/144 (68.75%), Query Frame = 0
Query:  238 LNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            + VY + + +I+LL+PDEE+ L R+I   LQLE +  + E  HG  P  +EWA+ + +   +  R L +   AKE M+ +NLRLVVS+A+ Y  RGL+F DLIQEG++GL++A EKF+ E G++F TYA WWI+++I   IA+Q
Sbjct:  145 IRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEIAAQFEADHGRQPDNKEWAALVEMPSIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQ 288          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.420e-34
Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 0
Query:  228 SSLSSSDANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            S++S   A  L+ Y   +  I LLKP+EEV LGR IQ GL+ E  ++ L       PS  EWA+ + + +D L   +  +  AK  MISANLRL VS+A+ Y+ RGLA  DL+QEG+ GL+KA E+F+P+ GF+F TYA WWIK+SI+  IA+Q
Sbjct:   48 SAVSPVGAGALSWYLSRMSAIDLLKPEEEVTLGRHIQLGLEWEAAKEELAVRLERQPSRAEWAAHMGVDEDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYKHRGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQ 201          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: A0A4P7ZRF3_9SYNE (RNA polymerase sigma factor SigA n=4 Tax=Synechococcaceae TaxID=1890426 RepID=A0A4P7ZRF3_9SYNE)

HSP 1 Score: 141 bits (355), Expect = 4.020e-34
Identity = 68/144 (47.22%), Postives = 100/144 (69.44%), Query Frame = 0
Query:  238 LNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            + VY + + +I+LL+PDEE+ L R+I   LQLE +  + ET HG  P  +EWA+ + +   +  R L +   AKE M+ +NLRLVVS+A+ Y  RGL+F DLIQEG++GL++A EKF+ E G++F TYA WWI+++I   IA+Q
Sbjct:  156 IRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQ 299          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: Q7VD88_PROMA (RNA polymerase sigma factor SigA n=1 Tax=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) TaxID=167539 RepID=Q7VD88_PROMA)

HSP 1 Score: 140 bits (352), Expect = 7.150e-34
Identity = 67/144 (46.53%), Postives = 101/144 (70.14%), Query Frame = 0
Query:  238 LNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            + VY + + +I+LL+PDEE+ L R+I   L LE +  + E+ HG  P+ +EWA+ +++      R L +A  AKE M+ +NLRLVVS+A+ Y  RGL+F DLIQEG++GL++A EKF+ E G++F TYA WWI+++I   IA+Q
Sbjct:  130 IRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNMPMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQ 273          
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Match: A0A6P1AEV6_9CYAN (RNA polymerase sigma factor SigA n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AEV6_9CYAN)

HSP 1 Score: 138 bits (348), Expect = 9.450e-34
Identity = 67/144 (46.53%), Postives = 100/144 (69.44%), Query Frame = 0
Query:  238 LNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSILTGIANQ 381
            + VY + + +I+LL+ DEE+ L R+I   L+LER+R+RL       PS  EWAS + +  ++  R L +   AK+ M+ +NLRLVVS+A+ Y  RGL+F DLIQEG++GL++A EKF+ E G++F TYA WWI+++I   IA+Q
Sbjct:   71 IRVYLQEIGRIRLLRADEEIELARKIADLLELERIRERLFDRLDREPSDREWASEVEMDLNQFRRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQ 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9847.31663.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA31_9PHAE3.490e-14980.47RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
D8LNI6_ECTSI5.010e-4358.33Chloroplast RNA-polymerase sigma factor n=1 Tax=Ec... [more]
A0A6H5K3H4_9PHAE2.540e-4257.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WX55_9STRA1.850e-3750.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835ZBY3_9STRA2.310e-3650.33RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A2P7MXF5_9CYAN3.410e-3446.53RNA polymerase sigma factor SigA n=3 Tax=Cyanobium... [more]
A0A835ZES3_9STRA3.420e-3448.05RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A4P7ZRF3_9SYNE4.020e-3447.22RNA polymerase sigma factor SigA n=4 Tax=Synechoco... [more]
Q7VD88_PROMA7.150e-3446.53RNA polymerase sigma factor SigA n=1 Tax=Prochloro... [more]
A0A6P1AEV6_9CYAN9.450e-3446.53RNA polymerase sigma factor SigA n=1 Tax=Kamptonem... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 338..351
score: 62.03
coord: 362..370
score: 73.05
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 309..377
e-value: 3.7E-15
score: 53.9
NoneNo IPR availableGENE3D1.20.120.1810coord: 231..381
e-value: 3.5E-38
score: 133.6
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 196..381
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 196..381
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..381
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 314..378
e-value: 1.1E-14
score: 54.0
IPR009042RNA polymerase sigma-70 region 1.2PFAMPF00140Sigma70_r1_2coord: 237..268
e-value: 7.9E-8
score: 32.2
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 234..381

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9847contigEcto-sp8_S_contig9847:4259..6682 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9847.31663.1mRNA_Ecto-sp8_S_contig9847.31663.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9847 3929..6682 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9847.31663.1 ID=prot_Ecto-sp8_S_contig9847.31663.1|Name=mRNA_Ecto-sp8_S_contig9847.31663.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=381bp
MVLSRRRLTAVCVVGAMCASAPPRTQGFAPPGSFGRAHGAGDSFYCAERR
LAATSLGESTSAASTPGRRERRAAAAVSRCSMASSGRKAAARPGVAARSG
AARAAASATRKRGRDRVPPSSSSAGVAVKDRAATDVGAVDKQSRARGTGS
QATAQTAAAKGGGGGALANPPPPAKGFRRKNSGGGGKKKKTTAAAAESKA
GAAGGVAPPSKDVSPSVPAVTVSAASSSSLSSSDANPLNVYFKTLKKIKL
LKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDEL
LRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKA
CEKFNPEMGFQFYTYARWWIKKSILTGIANQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR009042RNA_pol_sigma70_r1_2
IPR013325RNA_pol_sigma_r2