prot_Ecto-sp8_S_contig9636.31317.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9636.31317.1
Unique Nameprot_Ecto-sp8_S_contig9636.31317.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length234
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9636.31317.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.750e-6
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 0 
Query:   37 GTTCSNGLAGVEDPLGKVCCAPSCPQCAGGGCGGFDGAL---CCETNVTASSIYCDVAQEAPCILGD 100
            GTTCSNGL+G+E   G VCC   C  C G GCG   G     CC + +   +  C V +EAPC++ +
Sbjct:   21 GTTCSNGLSGLEK--GGVCCPVECGTCGGTGCGSRPGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDE 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9636.31317.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNF5_9PHAE4.750e-643.28MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 227..234
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 184..202
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 203..226
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..183
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.547
NoneNo IPR availableTMHMMTMhelixcoord: 163..185
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 206..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9636contigEcto-sp8_S_contig9636:3405..7153 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9636.31317.1mRNA_Ecto-sp8_S_contig9636.31317.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9636 3405..7153 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9636.31317.1 ID=prot_Ecto-sp8_S_contig9636.31317.1|Name=mRNA_Ecto-sp8_S_contig9636.31317.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=234bp
MGSRNARCWGSTAAAATLTAKVFLGSVGLGALPAVGGTTCSNGLAGVEDP
LGKVCCAPSCPQCAGGGCGGFDGALCCETNVTASSIYCDVAQEAPCILGD
VPGSLSTLISSPKSPSVAPTLTPPSGALTPTTAPKEHMPRGPPVPSISPT
QAEGLDDGVAHTSIAAASVVGSFLLVVLVLTCAGLKSHCDEKRKSIRRSL
EALFARGSFWGAMFVLFGLLIALNIYNYSSPWAA
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