mRNA_Ecto-sp8_S_contig9636.31317.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9636.31317.1
Unique NamemRNA_Ecto-sp8_S_contig9636.31317.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9636.31317.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.750e-6
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:  109 GTTCSNGLAGVEDPLGKVCCAPSCPQCAGGGCGGFDGAL---CCETNVTASSIYCDVAQEAPCILGD 300
            GTTCSNGL+G+E   G VCC   C  C G GCG   G     CC + +   +  C V +EAPC++ +
Sbjct:   21 GTTCSNGLSGLEK--GGVCCPVECGTCGGTGCGSRPGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDE 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9636.31317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNF5_9PHAE4.750e-643.28MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9636contigEcto-sp8_S_contig9636:3405..7153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score66.2
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog2880.D7FIC5
Model size702
KEGG koko:K13023
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size702
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.4408832-CDS-Ecto-sp8_S_contig9636:3404..35131681145327.4408832-CDS-Ecto-sp8_S_contig9636:3404..3513Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9636 3405..3513 +
1681145327.4572744-CDS-Ecto-sp8_S_contig9636:5593..57821681145327.4572744-CDS-Ecto-sp8_S_contig9636:5593..5782Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9636 5594..5782 +
1681145327.468842-CDS-Ecto-sp8_S_contig9636:6305..63831681145327.468842-CDS-Ecto-sp8_S_contig9636:6305..6383Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9636 6306..6383 +
1681145327.4806643-CDS-Ecto-sp8_S_contig9636:6827..71531681145327.4806643-CDS-Ecto-sp8_S_contig9636:6827..7153Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9636 6828..7153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9636.31317.1prot_Ecto-sp8_S_contig9636.31317.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9636 3405..7153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9636.31317.1

>prot_Ecto-sp8_S_contig9636.31317.1 ID=prot_Ecto-sp8_S_contig9636.31317.1|Name=mRNA_Ecto-sp8_S_contig9636.31317.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=234bp
MGSRNARCWGSTAAAATLTAKVFLGSVGLGALPAVGGTTCSNGLAGVEDP
LGKVCCAPSCPQCAGGGCGGFDGALCCETNVTASSIYCDVAQEAPCILGD
VPGSLSTLISSPKSPSVAPTLTPPSGALTPTTAPKEHMPRGPPVPSISPT
QAEGLDDGVAHTSIAAASVVGSFLLVVLVLTCAGLKSHCDEKRKSIRRSL
EALFARGSFWGAMFVLFGLLIALNIYNYSSPWAA
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mRNA from alignment at Ecto-sp8_S_contig9636:3405..7153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9636.31317.1 ID=mRNA_Ecto-sp8_S_contig9636.31317.1|Name=mRNA_Ecto-sp8_S_contig9636.31317.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3749bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9636:3405..7153+ (Ectocarpus species8 EcLAC_412)
ATGGGCTCGCGAAATGCACGTTGCTGGGGCTCCACCGCTGCTGCTGCCAC
GCTGACTGCGAAAGTATTCCTGGGTTCGGTTGGGTTAGGTGCCCTTCCCG
CCGTCGGTGGTAAGACAACATGTTTCGCCTGCACTACTGCAGAAGGTGCC
CGCACTATGTAACATGTACTTCAACCTGCGGTAGTTTTGGCACAGTTTGG
GGTTCATAGTTCCTTGAGGGTCATCCTACGAATGGCCACCACGTAGTTTT
GTTGTGTCGGGGTTTTAAACCGGGCTCACAAGTGGTGCACAAGCTCTTAG
GTTTTTTGAGATTTTTTAGCAGGATCACCTCTTAACTACCAAGCGCGGGC
GCTTTGTTCAGTTGTTGTACTGCACGGTACGCCGCCTGCTCGGAACCGCC
ATCACGGTCCAGTTTAAGCACGAGCACCATGATATTCCCAAGTCTGCTGC
TCCTGTTCTGATAGGCGGCGTGACACATTCATTGCAGCTCCTTGGTGCAA
GGTAAAGTGCTCTGGAGGCTGTGCTCGTACCAGAATCGTTCACACGTCCT
TCAAAGCAGGGACGGCCGTTCACTCCGAACAAATACATACCCTTACCGAA
TGAGAAACGAACAAAAAAATATTTTCGATTTTTTCCGGCCGGCAGGATAC
CAAAAAAACCGGGGATATAAAAATGCCCCGTCCCGGGGGAAATCAACCGT
TCCATTGTGCTGCTGATGCTGCTCTATGTGCAGGTACACCCAAAACAGTA
AATGCTTTCGATGTTTTTGTGACCGCCTCTTCTTTGTGCGTGACCGCCTT
TCTTTCTGTTCGTGAGAGATGCATATTCCGGAGTACGCTTGTTTGTTCTT
GGTTGACTCTAAAAACGCTCCGAACAAATTTGATAGCAGTCAGTCGTGCA
GATAGGTGTGTTCAGCAGCAAGCACCACGCTTTCTTGGGTCTCATAGTTC
GTCGTTGGGCAGGCAAGCAAGGACGCGGGATGCGCTTGTGTAGTTCCCCT
CTTCCACAGCTAGCTTCACAGCTTGACAGCAACGATAGAAAAATATTCCA
AAGATGCGATGAAAACAAGAAAGCGATGAAGTTCCCGCCGGTCCGTGTCT
CCCTCCACAAGCAACGAGGGAAAAGAAAAATAAACGGGAAAAACTACCAT
CCCGAGAAGTCAGAAAAACAAAATTGTCAACGAGCAAACCATCACCGCCG
TCGTCCCATTCCCCCACCATCCCAAACCCCAAAAAAGAAGCGATACTCAT
CTACTCTCCTTCTGTCGTGTAGTTGAAATATGAATCAAAACAGAAAAGCG
GGCGAGCAAAGGCTCGCCTACAATTCTACCAGCTCGTCACTGAACGATAG
CCGTCTGATTGTGCCAAGGTCGCCGCTCGCGAGGGCAGGGTTAGGGTTTG
GTTGGGGGGCTGGGGCGACCTCCGCAAGTGAGACCCCCGCAGGGTACAGT
TTCCCCCCCCCAGTACTTGGCTGTACTTGGCTCTACCCACCCGGCAGAGT
ATTTACCGGAATTTTCCCGGCAAGGGGGAAGGGACATCCCAAGTAGGCAT
TCATGTGGCCTCCTTGTGGTGGGTCGTAATTTCGGCCGCTCTTTCGTTTC
GTTCGAGTAGGAGAAACAGAGACCCAACTCTCGGCAAACCATATTGTGCG
GAGAGATAATGTAGGACGTCAACGTTCTTCCTTCATGTTCCAGATTCCCT
CCCTCGTTTTTTTTGGCTCCGCTGCTCGTGATGATGCTCGGCTCGTCGTC
GGCGTGCCTTCGGCGTTGTACACATCCAGTGTCCGCGGTGGCTAAGCCCA
TTCCCGTACCGTCAGGTAACGGCACCTTTGTTGGTTACACCATCGGAGAG
CATTGTGGATGGCGTTATTGCCGGCAGACTGTGGAAGAGGGAATCCGACC
AAGTCACTCGTTGCTCCGGTCCAATAGCAACCTCACGCGTTTATTCATGT
TTTAGTTCACGTCGCGTCTGCCGAAGTCGAGGGAAAAAGTCTTTCTCAAA
AACGCTTTCTTGTACGTCCTGCGTCGGTTCCAGGGTGTGCTGCGTACAGG
TCAAGGGTCTGCTGTTTCGGACGAACAAGAGGCTATCTCCAGGACTCCCC
GCCCCCCCCCTTTACCAACTGCGATGTCAATACACGCCACGCCATCGTTC
CCCCGCTGCTTGCTGGCTGTACCGTGTGAATTTTTTCAGGCACGACCTGC
AGCAACGGCTTGGCAGGGGTTGAGGATCCCCTCGGCAAGGTCTGCTGCGC
GCCCTCGTGTCCGCAATGCGCCGGCGGAGGGTGCGGGGGGTTCGACGGCG
CCCTGTGCTGCGAAACCAACGTGACTGCGTCGAGCATTTATTGTGATGTC
GCGCAAGAGGCCCCGTGTATCCTCGGTGGTGAGTCTCCATCTATCTGTGC
ATCTTGTGCGAAAAGAACTGACCGGGAGGGGGGGCGTACTCATGCTTTGC
ACGCCTTATGGCGAGCGGTCACGCCATAGACTAACGCGTCCTCGATAGGA
CGGCCGGCAGGAGGTGTACACCTGGGTACGAGGTTTCTTCGTCATGATCT
CTTTGATAACTTTCTCGCCATATACGGAGCTGCACCAAGTGAGAGGAGTC
GTGTACCACTGGAATTCGTTTGTGGTGCCTCGGAGGAGGCAAGAACAAAG
TGATGTAGGACGCCATCCAGACCTCAAGCGCCAAACGGTGGGGTTGCTGA
AAGCCTAGGCTCGTACACGAAGCATTTAGTGCGTTGTGTTGAAAAATTTT
CGAATCCGCTGCATTGTGCACAAATGGCTGTTTTTCTGAGATGGGCGTAC
ACATGCTTCATATGACCACAACTGACGGTTTCATTCGCCCCCCCCTCCCC
CTCCTTCTCTGTCGTGCCCCCGGGGATGATCTTCTTGCCGCGGCCCTTTA
GATGTGCCGGGATCGCTTTCTACGCTTATATCTTCTCCGAAGTCACCGTC
AGTCGCGCCTACCTTGACTCCACCTTCAGGTATGTGAATTAGCAATCTCG
GTGTGATTGAACCTCCTTTCTCGGCAGACTCATCGTGGGACCACACGGCA
CCACGTGCATTTGACTACGTCGTTCCCTTGAAACAGACGGTACGACGAGT
AGCTCGAAATCGGGCAAAGCACGGCCGTAAATTCAATTTCGCGCGTCCCA
CGCCAATGTAGGTTCGGCCGCTATATCGTGTGTATCTTCGTCTATCGTCA
CGGTACATGTTTGAGGATACCCCGGTGGCAGGCATAACAGAGAATACCGG
CCGCCCGGCTAAGACAACGCGATCGATCGTGACGCTTCACACGAAACGTC
TCAGTGTTCGATTTCTCTTTCCAGCACCACGGTTCCGTTTTCGCTGGTCG
GTTCGCCGACGTCCTGGGCCGAGGAGATGCCGCGACCGTAACAAACGGGA
CCACACGCTCCCTCCTCCACCAGGTGCTCTAACCCCGACAACGGCTCCCA
AGGAACACATGCCAAGGGGGCCGCCGGTGCCGTCCATCTCGCCCACCCAG
GCCGAGGGGCTGGACGACGGCGTCGCTCACACGTCAATCGCCGCCGCTTC
CGTGGTGGGGAGCTTCCTGTTGGTCGTCCTGGTGCTGACGTGCGCCGGGC
TGAAGTCGCACTGCGACGAGAAACGGAAGAGTATTCGGCGGTCCTTGGAG
GCGTTGTTCGCCCGGGGGTCTTTCTGGGGCGCCATGTTCGTCCTCTTCGG
CCTGCTCATCGCCCTCAACATCTACAACTACTCTTCGCCGTGGGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9636:3405..7153+

>mRNA_Ecto-sp8_S_contig9636.31317.1 ID=mRNA_Ecto-sp8_S_contig9636.31317.1|Name=mRNA_Ecto-sp8_S_contig9636.31317.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9636:3405..7153+ (Ectocarpus species8 EcLAC_412)
ATGGGCTCGCGAAATGCACGTTGCTGGGGCTCCACCGCTGCTGCTGCCAC
GCTGACTGCGAAAGTATTCCTGGGTTCGGTTGGGTTAGGTGCCCTTCCCG
CCGTCGGTGGCACGACCTGCAGCAACGGCTTGGCAGGGGTTGAGGATCCC
CTCGGCAAGGTCTGCTGCGCGCCCTCGTGTCCGCAATGCGCCGGCGGAGG
GTGCGGGGGGTTCGACGGCGCCCTGTGCTGCGAAACCAACGTGACTGCGT
CGAGCATTTATTGTGATGTCGCGCAAGAGGCCCCGTGTATCCTCGGTGAT
GTGCCGGGATCGCTTTCTACGCTTATATCTTCTCCGAAGTCACCGTCAGT
CGCGCCTACCTTGACTCCACCTTCAGGTGCTCTAACCCCGACAACGGCTC
CCAAGGAACACATGCCAAGGGGGCCGCCGGTGCCGTCCATCTCGCCCACC
CAGGCCGAGGGGCTGGACGACGGCGTCGCTCACACGTCAATCGCCGCCGC
TTCCGTGGTGGGGAGCTTCCTGTTGGTCGTCCTGGTGCTGACGTGCGCCG
GGCTGAAGTCGCACTGCGACGAGAAACGGAAGAGTATTCGGCGGTCCTTG
GAGGCGTTGTTCGCCCGGGGGTCTTTCTGGGGCGCCATGTTCGTCCTCTT
CGGCCTGCTCATCGCCCTCAACATCTACAACTACTCTTCGCCGTGGGCGG
CG
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