prot_Ecto-sp8_S_contig9537.31147.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9537.31147.1
Unique Nameprot_Ecto-sp8_S_contig9537.31147.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length352
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9537.31147.1 vs. uniprot
Match: A0A6H5JT76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT76_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 8.880e-141
Identity = 307/352 (87.22%), Postives = 312/352 (88.64%), Query Frame = 0 
Query:    1 MFVKTHAAAAASTVMALISLRTGESFVPCAGANPKTSXXXXXXXXXXXXXXXTSVGSKTAGHTPALLADRSSTRHRRGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKGLSSVEGAIERKQQLKVAELKKQLQRFASLRMWRRATEAFDKAKADGLPITAATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRASKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPTPSASTMADVLTSAIAACVTEGAWEQ 352
            MFVKTHAAAAASTVM LISL +GE FV  AGAN KT   XXXXX        TSVG K AGHTPALLADR +TRHR GN          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      QGKGLSSV+G IERKQQLKVAEL+KQLQRFASLRMWRRATEAFDKAKAD LPITAATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRA+KVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDP PSASTMADVLTSAIAACVTEGAWEQ
Sbjct:    1 MFVKTHAAAAASTVMVLISLGSGEGFVQPAGANLKTGSGXXXXXSNCCPSAATSVGRKAAGHTPALLADRGNTRHRIGNGNLILMCEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQKQQQGKGLSSVDGTIERKQQLKVAELEKQLQRFASLRMWRRATEAFDKAKADRLPITAATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRANKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPRPSASTMADVLTSAIAACVTEGAWEQ 352
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BLAST of mRNA_Ecto-sp8_S_contig9537.31147.1 vs. uniprot
Match: A0A812UQX1_9DINO (EMB2654 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812UQX1_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 9.290e-5
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0 
Query:  175 DGLPITA--ATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRASKVPAALRLLDEMSSRSGLSP 258
            DGL + A  AT+T  I+V  +G +W +   +LEEM        G  KV P +   +AAI+AC R+S   AAL +L ++S+RSG++P
Sbjct:  322 DGLQLQASEATFTSLIHVYGEGLQWLQVCGILEEMC-------GRFKVRPGIACTSAAISACERSSAWQAALDVLQQLSTRSGVAP 400
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9537.31147.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT76_9PHAE8.880e-14187.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812UQX1_9DINO9.290e-540.70EMB2654 protein n=1 Tax=Symbiodinium sp. CCMP2456 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 222..272
e-value: 2.8E-11
score: 43.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 225..260
e-value: 2.6E-6
score: 25.3
coord: 183..211
e-value: 2.3E-5
score: 22.2
coord: 261..294
e-value: 7.9E-8
score: 30.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 183..211
e-value: 3.1E-5
score: 23.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 259..293
score: 11.531
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 180..214
score: 9.756
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 223..258
score: 9.262
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 294..328
score: 5.919
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 146..352
e-value: 4.1E-41
score: 143.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 156..338
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 156..337
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..352
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9537contigEcto-sp8_S_contig9537:2..2674 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9537.31147.1mRNA_Ecto-sp8_S_contig9537.31147.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9537 2..2674 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9537.31147.1 ID=prot_Ecto-sp8_S_contig9537.31147.1|Name=mRNA_Ecto-sp8_S_contig9537.31147.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=352bp
MFVKTHAAAAASTVMALISLRTGESFVPCAGANPKTSSSSGGGSSNCCPS
AATSVGSKTAGHTPALLADRSSTRHRRGNGNLILMCEGGGGSPAAVGATA
GAAGRKGRKPPSAAAGVRRRPPQRQQQGKGLSSVEGAIERKQQLKVAELK
KQLQRFASLRMWRRATEAFDKAKADGLPITAATYTHAINVMSKGGRWKEA
IELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRASKVPAALRLLDEM
SSRSGLSPDIYSYAAVMSGLAKARNPGRAIELLGEMRAAGMEPDLVCLKG
AMEACRSKGAPKEAGVVLEQVRELDPTPSASTMADVLTSAIAACVTEGAW
EQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf