mRNA_Ecto-sp8_S_contig9537.31147.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9537.31147.1
Unique NamemRNA_Ecto-sp8_S_contig9537.31147.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9537.31147.1 vs. uniprot
Match: A0A6H5JT76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT76_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 8.880e-141
Identity = 307/352 (87.22%), Postives = 312/352 (88.64%), Query Frame = 1 
Query:    1 MFVKTHAAAAASTVMALISLRTGESFVPCAGANPKTSXXXXXXXXXXXXXXXTSVGSKTAGHTPALLADRSSTRHRRGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKGLSSVEGAIERKQQLKVAELKKQLQRFASLRMWRRATEAFDKAKADGLPITAATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRASKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPTPSASTMADVLTSAIAACVTEGAWEQ 1056
            MFVKTHAAAAASTVM LISL +GE FV  AGAN KT   XXXXX        TSVG K AGHTPALLADR +TRHR GN          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      QGKGLSSV+G IERKQQLKVAEL+KQLQRFASLRMWRRATEAFDKAKAD LPITAATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRA+KVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDP PSASTMADVLTSAIAACVTEGAWEQ
Sbjct:    1 MFVKTHAAAAASTVMVLISLGSGEGFVQPAGANLKTGSGXXXXXSNCCPSAATSVGRKAAGHTPALLADRGNTRHRIGNGNLILMCEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQKQQQGKGLSSVDGTIERKQQLKVAELEKQLQRFASLRMWRRATEAFDKAKADRLPITAATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRANKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPRPSASTMADVLTSAIAACVTEGAWEQ 352
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BLAST of mRNA_Ecto-sp8_S_contig9537.31147.1 vs. uniprot
Match: A0A812UQX1_9DINO (EMB2654 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812UQX1_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 9.290e-5
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  523 DGLPITA--ATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRASKVPAALRLLDEMSSRSGLSP 774
            DGL + A  AT+T  I+V  +G +W +   +LEEM        G  KV P +   +AAI+AC R+S   AAL +L ++S+RSG++P
Sbjct:  322 DGLQLQASEATFTSLIHVYGEGLQWLQVCGILEEMC-------GRFKVRPGIACTSAAISACERSSAWQAALDVLQQLSTRSGVAP 400
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9537.31147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT76_9PHAE8.880e-14187.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812UQX1_9DINO9.290e-540.70EMB2654 protein n=1 Tax=Symbiodinium sp. CCMP2456 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9537contigEcto-sp8_S_contig9537:2..2674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score363.2
Seed ortholog evalue1.3e-97
Seed eggNOG ortholog2880.D7FIX3
Model size1056
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-07_007800.1
Cds size1056
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145314.4740264-CDS-Ecto-sp8_S_contig9537:1..971681145314.4740264-CDS-Ecto-sp8_S_contig9537:1..97Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9537 2..97 -
1681145314.488588-CDS-Ecto-sp8_S_contig9537:425..7981681145314.488588-CDS-Ecto-sp8_S_contig9537:425..798Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9537 426..798 -
1681145314.5100408-CDS-Ecto-sp8_S_contig9537:1133..12571681145314.5100408-CDS-Ecto-sp8_S_contig9537:1133..1257Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9537 1134..1257 -
1681145314.5245614-CDS-Ecto-sp8_S_contig9537:2211..26741681145314.5245614-CDS-Ecto-sp8_S_contig9537:2211..2674Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9537 2212..2674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9537.31147.1prot_Ecto-sp8_S_contig9537.31147.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9537 2..2674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9537.31147.1

>prot_Ecto-sp8_S_contig9537.31147.1 ID=prot_Ecto-sp8_S_contig9537.31147.1|Name=mRNA_Ecto-sp8_S_contig9537.31147.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=352bp
MFVKTHAAAAASTVMALISLRTGESFVPCAGANPKTSSSSGGGSSNCCPS
AATSVGSKTAGHTPALLADRSSTRHRRGNGNLILMCEGGGGSPAAVGATA
GAAGRKGRKPPSAAAGVRRRPPQRQQQGKGLSSVEGAIERKQQLKVAELK
KQLQRFASLRMWRRATEAFDKAKADGLPITAATYTHAINVMSKGGRWKEA
IELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRASKVPAALRLLDEM
SSRSGLSPDIYSYAAVMSGLAKARNPGRAIELLGEMRAAGMEPDLVCLKG
AMEACRSKGAPKEAGVVLEQVRELDPTPSASTMADVLTSAIAACVTEGAW
EQ
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mRNA from alignment at Ecto-sp8_S_contig9537:2..2674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9537.31147.1 ID=mRNA_Ecto-sp8_S_contig9537.31147.1|Name=mRNA_Ecto-sp8_S_contig9537.31147.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2673bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9537:2..2674- (Ectocarpus species8 EcLAC_412)
ATGTTCGTGAAAACCCATGCTGCTGCGGCAGCGAGCACAGTGATGGCGCT
CATTTCCCTTCGTACTGGGGAGAGCTTTGTCCCGTGTGCTGGTGCCAACC
CCAAAACCAGCAGTAGCAGCGGCGGCGGGAGCAGCAACTGCTGTCCCAGC
GCTGCCACTTCTGTGGGGAGTAAAACTGCTGGTCACACGCCTGCGTTGCT
CGCGGATCGTAGTAGCACTAGGCATAGGAGAGGAAACGGGAACTTGATTT
TGATGTGCGAGGGCGGGGGGGGCTCGCCGGCTGCGGTAGGCGCAACCGCA
GGCGCGGCAGGGAGGAAGGGGCGGAAGCCGCCGTCAGCAGCGGCGGGAGT
CAGAAGAAGACCGCCTCAAAGGCAACAGCAGGGAAAGGGTTTGTCGTCGG
TCGAGGGCGCGATTGAGAGAAAACAGCAGCTCAAGGTGGCGGAGCTGAAG
AAGCAGTTGCAACGTGAGTCCACTGCAGCAGTGCTACTCGTGACGCGAGA
TATCACACCCCGCAGACCGATTGTCAAAGCTCGATTAGTCGACAGCAGTA
GGAATGGTGGCGGTGCCGAAATATGGCGGCAATAGAATCGTCTCGCGGAG
AACTTTGCGTTAAAGCGTTGTTTGAGTTGAAAACCCTCTTCGTCGTGGAG
TGATCGAGCATTGAACATGGGTACCAGGGGGTGCGGTATCTTGTGTCACC
CACAAGTCCAATGCAGTTGGGTGTGTGCCGCTGGTTATCCTGCGCGCACA
CGAAGGGTGTAGTAGTGTGGCAAGAACCCACAGATTTGCCCATTTCACAT
GCAATGGCTTGGACTCCTGCACTACAATGTATCGCCACAAGTTTTCTCCG
AAGTGAGGCAGCATTCCACTCCTGGCGCAAGCGAGAGCTAGATAGATAGC
AGGACTACATATGCTGTACTGTAAGCTTGTGGCCGAGAAGTGCGTCTGTC
TGGCCTCTGTCGTAGCCACCGCGGTATGCATGGCATAAACCTGAAACAGC
TGTGAACCCCAAATGCCGTTGGCAGCGACTTACCACAACGCGACACTTTC
ACGAATCACTGGAAACAGCAGAGTCTCCAAAGCTGCGCAAGGCGATCAGG
TGATTGGACCCTAACGGGGTGGACACAACGTCAAAAACGGTACCTCTGTA
GTGTCAAGCCTCCACAATTCCCCGGGCATACGATCTCAGAATGCAGCCCA
TCAATCTATTACAGGGTTGAGCTCGGCGACCTTAAATATCCATGCTCAAA
CATTCTTGCCTTCTCTTCAAGTCTAATCCATCTGACAGCAGTGTACAAGT
AGATCGCAAGGTCCTCCACGGCAGCATCACCCATGACCCAAGATTCTGCT
CGGGGCTTTCCACACATGGCATGCTCTCGCCCCCCCGCCCCCCGTCCTCC
GCACGCCTCTCCTGAAGGTTTCGCATCGTTACGGATGTGGCGACGTGCGA
CGGAGGCCTTTGACAAGGCTAAGGCCGACGGGCTGCCCATCACCGCCGCA
ACCTACACGCACGCCATCAACGTCATGAGCAAGGGCGGCAGGTACGGGAG
TTTCATGTGGGTATATCATAATAGGAGCCGGGGAAGAAGTTATTGAGGGG
ATGCATGGCGTAGAATGCGACAGGCTCTGCGTGCGGGATGCGAGTTAAGT
TGTTTCGTCAAACTAGTGATGCTAATGTTGCCACTAAGGTGCTACGGTCT
ACGTTGGATATATACAGACGGCCCTATTCCCTCCCCAGGGACTCCTCTCA
GTGAGCGTCAACACCAGCGAAAACGACATGGGCCATGTAGTTGACCAGTT
ATGTGTGTTTCGCCTTGTGCTAACAACGCTGCCCCCCCCCCCCCTCCCCT
CCAAAACAACAACTTTCCCCGGAAAGATGGAAAGAAGCAATAGAACTACT
AGAAGAAATGATCGCCGCTGGCAACGACAGCAATGGCGGCCCCAAGGTCA
CCCCGTCAGTGGTGAGCTACAACGCGGCCATCACGGCGTGCTCGAGGGCA
AGCAAGGTGCCTGCGGCGCTCCGCCTCCTCGACGAAATGTCCTCTAGGTC
GGGCCTCTCCCCCGACATCTACAGCTACGCGGCGGTCATGTCCGGCCTGG
CCAAGGCCAGGAATCCGGGGCGGGCGATCGAGCTGTTGGGGGAGATGCGC
GCGGCAGGGATGGAGCCGGACCTGGTGTGCCTGAAGGGGGCGATGGAGGC
TTGCCGGAGCAAGGGGGCGCCGAAGGAGGCGGGCGTGGTTCTTGAGCAGG
TGGGTGGCGCTGCTTGTTGTCTCGCAAGTGTGAAAGAAAAGAAAAGCTGT
TGTGGTGTGATTGGAGAAGAAGAAGAATTTTAGACTGATGCAACAAGAAG
AGCGTTGCATGATGCTTGATGCTTGATGCTTGATGAACCCAACTTAGTAC
ATAGGGGGACTGAAGATGGGAGGGATGGTGAGACGCGGGGAGAGGGTGCT
CGTGTGCAGGAGCTGCGCTTGGCCTGCCGCCGAAAGTCGACCATATCGCG
ATACCCCTTGCCAGAGCTCCGTTCGTTGTATCGACTTGGGCCCCCACTCC
CCCCTTGTGCCACCCCGACAAAATCAGGTCCGAGAGCTAGACCCCACACC
GAGCGCAAGCACCATGGCCGACGTCCTCACCTCTGCCATCGCGGCGTGCG
TGACGGAGGGCGCCTGGGAGCAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9537:2..2674-

>mRNA_Ecto-sp8_S_contig9537.31147.1 ID=mRNA_Ecto-sp8_S_contig9537.31147.1|Name=mRNA_Ecto-sp8_S_contig9537.31147.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9537:2..2674- (Ectocarpus species8 EcLAC_412)
ATGTTCGTGAAAACCCATGCTGCTGCGGCAGCGAGCACAGTGATGGCGCT
CATTTCCCTTCGTACTGGGGAGAGCTTTGTCCCGTGTGCTGGTGCCAACC
CCAAAACCAGCAGTAGCAGCGGCGGCGGGAGCAGCAACTGCTGTCCCAGC
GCTGCCACTTCTGTGGGGAGTAAAACTGCTGGTCACACGCCTGCGTTGCT
CGCGGATCGTAGTAGCACTAGGCATAGGAGAGGAAACGGGAACTTGATTT
TGATGTGCGAGGGCGGGGGGGGCTCGCCGGCTGCGGTAGGCGCAACCGCA
GGCGCGGCAGGGAGGAAGGGGCGGAAGCCGCCGTCAGCAGCGGCGGGAGT
CAGAAGAAGACCGCCTCAAAGGCAACAGCAGGGAAAGGGTTTGTCGTCGG
TCGAGGGCGCGATTGAGAGAAAACAGCAGCTCAAGGTGGCGGAGCTGAAG
AAGCAGTTGCAACGTTTCGCATCGTTACGGATGTGGCGACGTGCGACGGA
GGCCTTTGACAAGGCTAAGGCCGACGGGCTGCCCATCACCGCCGCAACCT
ACACGCACGCCATCAACGTCATGAGCAAGGGCGGCAGATGGAAAGAAGCA
ATAGAACTACTAGAAGAAATGATCGCCGCTGGCAACGACAGCAATGGCGG
CCCCAAGGTCACCCCGTCAGTGGTGAGCTACAACGCGGCCATCACGGCGT
GCTCGAGGGCAAGCAAGGTGCCTGCGGCGCTCCGCCTCCTCGACGAAATG
TCCTCTAGGTCGGGCCTCTCCCCCGACATCTACAGCTACGCGGCGGTCAT
GTCCGGCCTGGCCAAGGCCAGGAATCCGGGGCGGGCGATCGAGCTGTTGG
GGGAGATGCGCGCGGCAGGGATGGAGCCGGACCTGGTGTGCCTGAAGGGG
GCGATGGAGGCTTGCCGGAGCAAGGGGGCGCCGAAGGAGGCGGGCGTGGT
TCTTGAGCAGGTCCGAGAGCTAGACCCCACACCGAGCGCAAGCACCATGG
CCGACGTCCTCACCTCTGCCATCGCGGCGTGCGTGACGGAGGGCGCCTGG
GAGCAA
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