prot_Ecto-sp8_S_contig94827.31036.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig94827.31036.1
Unique Nameprot_Ecto-sp8_S_contig94827.31036.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length86
Homology
BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 6.050e-28
Identity = 62/85 (72.94%), Postives = 62/85 (72.94%), Query Frame = 0
Query:    2 NRYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVRAR 86
            N YCVNAALDACGKAGRVQEALGLMRDARASGIELDVVS                    IREMEAEYGIKPNHITYQAAIKV  R
Sbjct:  158 NSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIKVCGR 242          
BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A7S4RLI5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RLI5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.580e-7
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0
Query:    6 VNAALDACGKAG--RVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVRAR 86
            +N A+DAC +A   R+++A  +     + G+  +V ++   + AC    D   ALS++R M  EYGIKPN + Y  AI    R
Sbjct:  121 MNCAIDACARARPTRLEQAHDIFHHGVSLGLSPNVFTFGSLMSACARARDGSRALSLLRRMNEEYGIKPNGVVYSTAISACER 203          
BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A813KQZ9_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KQZ9_POLGL)

HSP 1 Score: 52.8 bits (125), Expect = 4.860e-6
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 0
Query:   13 CGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAA 80
            C K  R Q+ LGL+RDAR +G+ELDV + N  +  C +G  W  AL ++R +    G++P  ++Y AA
Sbjct:   14 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL-CCASG--WVAALELLRGLRGA-GLRPTEVSYGAA 77          
BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A813FGE0_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FGE0_POLGL)

HSP 1 Score: 52.8 bits (125), Expect = 4.890e-6
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 0
Query:   13 CGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAA 80
            C K  R Q+ LGL+RDAR +G+ELDV + N  +  C +G  W  AL ++R +    G++P  ++Y AA
Sbjct:  115 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL-CCASG--WVAALELLRGLRGA-GLRPTEVSYGAA 178          
BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A813HVC5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HVC5_POLGL)

HSP 1 Score: 52.8 bits (125), Expect = 5.080e-6
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 0
Query:   13 CGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAA 80
            C K  R Q+ LGL+RDAR +G+ELDV + N  +  C +G  W  AL ++R +    G++P  ++Y AA
Sbjct:  651 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL-CCASG--WVAALELLRGLRGA-GLRPTEVSYGAA 714          
BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A813EYD2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EYD2_POLGL)

HSP 1 Score: 52.4 bits (124), Expect = 6.760e-6
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 0
Query:   13 CGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAA 80
            C K  R Q+ LGL+RDAR +G+ELDV   N  +  C +G  W  AL ++R +    G++P  ++Y AA
Sbjct:  197 CAKQRRWQQGLGLLRDARKAGLELDVAELNAGL-CCASG--WVAALELLRGLRGA-GLRPTEVSYGAA 260          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G0M5_ECTSI6.050e-2872.94PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S4RLI5_9STRA4.580e-734.94Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A813KQZ9_POLGL4.860e-641.18Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A813FGE0_POLGL4.890e-641.18Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813HVC5_POLGL5.080e-641.18Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813EYD2_POLGL6.760e-641.18Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..86
e-value: 3.1E-22
score: 80.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 25..83
e-value: 2.7E-10
score: 40.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 5..38
e-value: 2.8E-6
score: 25.1
coord: 39..73
e-value: 3.5E-7
score: 28.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 2..36
score: 9.295
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..72
score: 8.923
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 7..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94827contigEcto-sp8_S_contig94827:315..572 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94827.31036.1mRNA_Ecto-sp8_S_contig94827.31036.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig94827 315..572 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig94827.31036.1 ID=prot_Ecto-sp8_S_contig94827.31036.1|Name=mRNA_Ecto-sp8_S_contig94827.31036.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
KNRYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVT
GGDWELALSMIREMEAEYGIKPNHITYQAAIKVRAR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat