mRNA_Ecto-sp8_S_contig94827.31036.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94827.31036.1
Unique NamemRNA_Ecto-sp8_S_contig94827.31036.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 6.050e-28
Identity = 62/85 (72.94%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    4 NRYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVRAR 258
            N YCVNAALDACGKAGRVQEALGLMRDARASGIELDVVS                    IREMEAEYGIKPNHITYQAAIKV  R
Sbjct:  158 NSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIKVCGR 242
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BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A7S4RLI5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RLI5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.580e-7
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   16 VNAALDACGKAG--RVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVRAR 258
            +N A+DAC +A   R+++A  +     + G+  +V ++   + AC    D   ALS++R M  EYGIKPN + Y  AI    R
Sbjct:  121 MNCAIDACARARPTRLEQAHDIFHHGVSLGLSPNVFTFGSLMSACARARDGSRALSLLRRMNEEYGIKPNGVVYSTAISACER 203
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BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A813KQZ9_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KQZ9_POLGL)

HSP 1 Score: 52.8 bits (125), Expect = 4.860e-6
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   37 CGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAA 240
            C K  R Q+ LGL+RDAR +G+ELDV + N  +  C +G  W  AL ++R +    G++P  ++Y AA
Sbjct:   14 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL-CCASG--WVAALELLRGLRGA-GLRPTEVSYGAA 77
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BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A813FGE0_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FGE0_POLGL)

HSP 1 Score: 52.8 bits (125), Expect = 4.890e-6
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   37 CGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAA 240
            C K  R Q+ LGL+RDAR +G+ELDV + N  +  C +G  W  AL ++R +    G++P  ++Y AA
Sbjct:  115 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL-CCASG--WVAALELLRGLRGA-GLRPTEVSYGAA 178
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BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A813HVC5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HVC5_POLGL)

HSP 1 Score: 52.8 bits (125), Expect = 5.080e-6
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   37 CGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAA 240
            C K  R Q+ LGL+RDAR +G+ELDV + N  +  C +G  W  AL ++R +    G++P  ++Y AA
Sbjct:  651 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL-CCASG--WVAALELLRGLRGA-GLRPTEVSYGAA 714
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BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Match: A0A813EYD2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EYD2_POLGL)

HSP 1 Score: 52.4 bits (124), Expect = 6.760e-6
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   37 CGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAA 240
            C K  R Q+ LGL+RDAR +G+ELDV   N  +  C +G  W  AL ++R +    G++P  ++Y AA
Sbjct:  197 CAKQRRWQQGLGLLRDARKAGLELDVAELNAGL-CCASG--WVAALELLRGLRGA-GLRPTEVSYGAA 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94827.31036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G0M5_ECTSI6.050e-2872.94PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S4RLI5_9STRA4.580e-734.94Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A813KQZ9_POLGL4.860e-641.18Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A813FGE0_POLGL4.890e-641.18Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813HVC5_POLGL5.080e-641.18Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813EYD2_POLGL6.760e-641.18Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94827contigEcto-sp8_S_contig94827:315..572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.9
Seed ortholog evalue9.1e-24
Seed eggNOG ortholog2880.D7G0M5
Model size258
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size258
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145306.664755-CDS-Ecto-sp8_S_contig94827:314..5721681145306.664755-CDS-Ecto-sp8_S_contig94827:314..572Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94827 315..572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94827.31036.1prot_Ecto-sp8_S_contig94827.31036.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94827 315..572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94827.31036.1

>prot_Ecto-sp8_S_contig94827.31036.1 ID=prot_Ecto-sp8_S_contig94827.31036.1|Name=mRNA_Ecto-sp8_S_contig94827.31036.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
KNRYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVT
GGDWELALSMIREMEAEYGIKPNHITYQAAIKVRAR
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mRNA from alignment at Ecto-sp8_S_contig94827:315..572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94827.31036.1 ID=mRNA_Ecto-sp8_S_contig94827.31036.1|Name=mRNA_Ecto-sp8_S_contig94827.31036.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94827:315..572+ (Ectocarpus species8 EcLAC_412)
AAAAACAGGTACTGCGTGAACGCTGCGCTCGACGCGTGCGGCAAGGCCGG
GCGGGTCCAGGAAGCCCTGGGCCTCATGAGGGACGCGCGGGCGTCGGGGA
TAGAGCTCGACGTTGTGAGCTACAACTGCGCTATCCCGGCCTGCGTAACG
GGGGGGGACTGGGAGCTGGCCCTGAGCATGATTCGGGAGATGGAGGCCGA
GTACGGCATCAAGCCGAATCACATCACCTACCAGGCGGCGATAAAGGTGC
GCGCTCGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94827:315..572+

>mRNA_Ecto-sp8_S_contig94827.31036.1 ID=mRNA_Ecto-sp8_S_contig94827.31036.1|Name=mRNA_Ecto-sp8_S_contig94827.31036.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94827:315..572+ (Ectocarpus species8 EcLAC_412)
AAAAACAGGTACTGCGTGAACGCTGCGCTCGACGCGTGCGGCAAGGCCGG
GCGGGTCCAGGAAGCCCTGGGCCTCATGAGGGACGCGCGGGCGTCGGGGA
TAGAGCTCGACGTTGTGAGCTACAACTGCGCTATCCCGGCCTGCGTAACG
GGGGGGGACTGGGAGCTGGCCCTGAGCATGATTCGGGAGATGGAGGCCGA
GTACGGCATCAAGCCGAATCACATCACCTACCAGGCGGCGATAAAGGTGC
GCGCTCGC
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