prot_Ecto-sp8_S_contig92150.30595.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig92150.30595.1
Unique Nameprot_Ecto-sp8_S_contig92150.30595.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length48
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92150.30595.1 vs. uniprot
Match: D8LBY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.220e-18
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0 
Query:    1 LVVFTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIG 46
            LVV TVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWI DGIG
Sbjct:   52 LVVLTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWITDGIG 97
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BLAST of mRNA_Ecto-sp8_S_contig92150.30595.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.330e-8
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 
Query:    6 VILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIG 46
            V+L V   LLWPILF  +VDG TS SW A+WTPLWI D +G
Sbjct:  127 VLLFVGAVLLWPILFCAKVDGDTSASWVALWTPLWIYDALG 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92150.30595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBY5_ECTSI2.220e-1895.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K446_9PHAE3.330e-863.41J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..48
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availableTMHMMTMhelixcoord: 2..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92150contigEcto-sp8_S_contig92150:233..376 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92150.30595.1mRNA_Ecto-sp8_S_contig92150.30595.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig92150 233..376 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig92150.30595.1 ID=prot_Ecto-sp8_S_contig92150.30595.1|Name=mRNA_Ecto-sp8_S_contig92150.30595.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
LVVFTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIGKI
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