mRNA_Ecto-sp8_S_contig92150.30595.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92150.30595.1
Unique NamemRNA_Ecto-sp8_S_contig92150.30595.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92150.30595.1 vs. uniprot
Match: D8LBY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.220e-18
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 LVVFTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIG 138
            LVV TVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWI DGIG
Sbjct:   52 LVVLTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWITDGIG 97
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BLAST of mRNA_Ecto-sp8_S_contig92150.30595.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.330e-8
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   16 VILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIG 138
            V+L V   LLWPILF  +VDG TS SW A+WTPLWI D +G
Sbjct:  127 VLLFVGAVLLWPILFCAKVDGDTSASWVALWTPLWIYDALG 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92150.30595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBY5_ECTSI2.220e-1895.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K446_9PHAE3.330e-863.41J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92150contigEcto-sp8_S_contig92150:233..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size144
Hectar predicted targeting categorysignal peptide
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145273.6998322-CDS-Ecto-sp8_S_contig92150:232..3761681145273.6998322-CDS-Ecto-sp8_S_contig92150:232..376Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92150 233..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92150.30595.1prot_Ecto-sp8_S_contig92150.30595.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92150 233..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92150.30595.1

>prot_Ecto-sp8_S_contig92150.30595.1 ID=prot_Ecto-sp8_S_contig92150.30595.1|Name=mRNA_Ecto-sp8_S_contig92150.30595.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
LVVFTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWIADGIGKI
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mRNA from alignment at Ecto-sp8_S_contig92150:233..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92150.30595.1 ID=mRNA_Ecto-sp8_S_contig92150.30595.1|Name=mRNA_Ecto-sp8_S_contig92150.30595.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92150:233..376+ (Ectocarpus species8 EcLAC_412)
TTGGTGGTGTTCACGGTCATTCTTCTGGTTAGCGTGTCGCTGCTGTGGCC
CATCTTGTTCTCCCTGAGGGTAGACGGGACGACCTCCATGTCCTGGGCGG
CCGTGTGGACCCCTCTGTGGATTGCCGATGGCATCGGTAAGATA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92150:233..376+

>mRNA_Ecto-sp8_S_contig92150.30595.1 ID=mRNA_Ecto-sp8_S_contig92150.30595.1|Name=mRNA_Ecto-sp8_S_contig92150.30595.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92150:233..376+ (Ectocarpus species8 EcLAC_412)
TTGGTGGTGTTCACGGTCATTCTTCTGGTTAGCGTGTCGCTGCTGTGGCC
CATCTTGTTCTCCCTGAGGGTAGACGGGACGACCTCCATGTCCTGGGCGG
CCGTGTGGACCCCTCTGTGGATTGCCGATGGCATCGGTAAGATA
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