prot_Ecto-sp8_S_contig91893.30541.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig91893.30541.1
Unique Nameprot_Ecto-sp8_S_contig91893.30541.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length52
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig91893.30541.1 vs. uniprot
Match: A0A6H5LA68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA68_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.010e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0 
Query:    1 MDRASEFVGRSLYVLESATMEAFRPMDGACRLDATLEVNKTYFAAMFRHMQV 52
            MDRASEFVGRSLYVLESATMEAFRP+DGACRLDATLEVNKTYFAAMFRHMQ+
Sbjct:  124 MDRASEFVGRSLYVLESATMEAFRPVDGACRLDATLEVNKTYFAAMFRHMQM 175
[Close]
BLAST of mRNA_Ecto-sp8_S_contig91893.30541.1 vs. uniprot
Match: D7FK35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK35_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.180e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0 
Query:    1 MDRASEFVGRSLYVLESATMEAFRPMDGACRLDATLEVNKTYFAAMFRHMQV 52
            MDRASEFVGRSLYVLESATMEAFRP+DGACRLDATLEVNKTYFAAMFRHMQ+
Sbjct:  326 MDRASEFVGRSLYVLESATMEAFRPVDGACRLDATLEVNKTYFAAMFRHMQM 377
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig91893.30541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LA68_9PHAE1.010e-2496.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK35_ECTSI1.180e-2496.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006994TCF25/Rqc1PFAMPF04910Tcf25coord: 3..51
e-value: 3.6E-7
score: 29.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig91893contigEcto-sp8_S_contig91893:2..157 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig91893.30541.1mRNA_Ecto-sp8_S_contig91893.30541.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig91893 2..160 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig91893.30541.1 ID=prot_Ecto-sp8_S_contig91893.30541.1|Name=mRNA_Ecto-sp8_S_contig91893.30541.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
MDRASEFVGRSLYVLESATMEAFRPMDGACRLDATLEVNKTYFAAMFRHM
QV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006994TCF25/Rqc1