mRNA_Ecto-sp8_S_contig91893.30541.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig91893.30541.1
Unique NamemRNA_Ecto-sp8_S_contig91893.30541.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig91893.30541.1 vs. uniprot
Match: D7FK35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK35_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.600e-25
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 QMDRASEFVGRSLYVLESATMEAFRPMDGACRLDATLEVNKTYFAAMFRHMQV 159
            QMDRASEFVGRSLYVLESATMEAFRP+DGACRLDATLEVNKTYFAAMFRHMQ+
Sbjct:  325 QMDRASEFVGRSLYVLESATMEAFRPVDGACRLDATLEVNKTYFAAMFRHMQM 377
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BLAST of mRNA_Ecto-sp8_S_contig91893.30541.1 vs. uniprot
Match: A0A6H5LA68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA68_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.060e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 MDRASEFVGRSLYVLESATMEAFRPMDGACRLDATLEVNKTYFAAMFRHMQV 159
            MDRASEFVGRSLYVLESATMEAFRP+DGACRLDATLEVNKTYFAAMFRHMQ+
Sbjct:  124 MDRASEFVGRSLYVLESATMEAFRPVDGACRLDATLEVNKTYFAAMFRHMQM 175
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BLAST of mRNA_Ecto-sp8_S_contig91893.30541.1 vs. uniprot
Match: A0A835ZGE8_9STRA (Transcriptional repressor TCF25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGE8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.720e-7
Identity = 28/52 (53.85%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 QMDRASEFVGRSLYVLESATMEAFRPMDGACRLDATLEVNKTYFAAMFRHMQ 156
            QMD ASEFV R LYVLE A +E  +   G  R+D T   N T F A+FRH Q
Sbjct:  327 QMDHASEFVRRCLYVLECAVLEPCKLASGRVRMDVTHPPNATLFGALFRHAQ 378
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig91893.30541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK35_ECTSI2.600e-2596.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA68_9PHAE1.060e-2496.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGE8_9STRA2.720e-753.85Transcriptional repressor TCF25-domain-containing ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig91893contigEcto-sp8_S_contig91893:2..160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score104.4
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog2880.D7FK35
Preferred nameTCF25
Model size159
KEGG koko:K14206
KEGG TC2.A.17.4.1,2.A.17.4.2
KEGG Pathwayko04974,map04974
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006412,GO:0006414,GO:0006417,GO:0006508,GO:0006511,GO:0006518,GO:0006807,GO:0007275,GO:0007507,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0072344,GO:0072359,GO:0080090,GO:0140110,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990112,GO:1990116,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.ribosome-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG2422@1,KOG2422@2759
Cds size156
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145269.9590306-CDS-Ecto-sp8_S_contig91893:1..1571681145269.9590306-CDS-Ecto-sp8_S_contig91893:1..157Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig91893 2..157 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145269.972749-UTR-Ecto-sp8_S_contig91893:157..1601681145269.972749-UTR-Ecto-sp8_S_contig91893:157..160Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig91893 158..160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig91893.30541.1prot_Ecto-sp8_S_contig91893.30541.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig91893 2..157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig91893.30541.1

>prot_Ecto-sp8_S_contig91893.30541.1 ID=prot_Ecto-sp8_S_contig91893.30541.1|Name=mRNA_Ecto-sp8_S_contig91893.30541.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
MDRASEFVGRSLYVLESATMEAFRPMDGACRLDATLEVNKTYFAAMFRHM
QV
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mRNA from alignment at Ecto-sp8_S_contig91893:2..160-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig91893.30541.1 ID=mRNA_Ecto-sp8_S_contig91893.30541.1|Name=mRNA_Ecto-sp8_S_contig91893.30541.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91893:2..160- (Ectocarpus species8 EcLAC_412)
CAGATGGATCGTGCGTCCGAGTTTGTCGGGCGATCCCTGTACGTCCTCGA
AAGCGCTACGATGGAGGCGTTCAGGCCGATGGACGGCGCTTGTCGCCTGG
ATGCCACCCTCGAAGTCAACAAGACCTACTTCGCGGCGATGTTCAGGCAC
ATGCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig91893:2..160-

>mRNA_Ecto-sp8_S_contig91893.30541.1 ID=mRNA_Ecto-sp8_S_contig91893.30541.1|Name=mRNA_Ecto-sp8_S_contig91893.30541.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91893:2..160- (Ectocarpus species8 EcLAC_412)
ATGGATCGTGCGTCCGAGTTTGTCGGGCGATCCCTGTACGTCCTCGAAAG
CGCTACGATGGAGGCGTTCAGGCCGATGGACGGCGCTTGTCGCCTGGATG
CCACCCTCGAAGTCAACAAGACCTACTTCGCGGCGATGTTCAGGCACATG
CAGGTG
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