prot_Ecto-sp8_S_contig11833.2148.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp8_S_contig11833.2148.1
Unique Name	prot_Ecto-sp8_S_contig11833.2148.1
Type	polypeptide
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length	252

Homology

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BLAST of mRNA_Ecto-sp8_S_contig11833.2148.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 1.110e-123
Identity = 208/254 (81.89%), Postives = 211/254 (83.07%), Query Frame = 0

Query:    1 MVSSGPFAGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERER--GPVHGTVLPPSNKRAKPLQPQTLALGSGAIGQSVCVTDSTSVITGTTGSTTRIASKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGGLRRGSPTFSRVGSGSFPRKRGGTSRNAAGKLPVRAVEAFELRDGRTILVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRCRLRQ 252
            MVSSGP AGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERER  GPV GTVL P NKRAKPLQPQ LALGSGA+GQSVCVTDSTSVIT TTG+ TRIASKP                            VGGG RRGSPTFSRVGSGSFPRKRGG SRNAAGKL VRAVEAFELRDGRT+LVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQ R CR RQ
Sbjct:    1 MVSSGPLAGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERERERGPVRGTVLLPQNKRAKPLQPQNLALGSGAMGQSVCVTDSTSVITSTTGAATRIASKPGTTGSPKDAADISPQPGNGQLVSAGSPPVGGGSRRGSPTFSRVGSGSFPRKRGGASRNAAGKLSVRAVEAFELRDGRTVLVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQGRHCRSRQ 254

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BLAST of mRNA_Ecto-sp8_S_contig11833.2148.1 vs. uniprot
Match: D7FN13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN13_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 7.720e-121
Identity = 205/254 (80.71%), Postives = 207/254 (81.50%), Query Frame = 0

Query:    1 MVSSGPFAGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERER--GPVHGTVLPPSNKRAKPLQPQTLALGSGAIGQSVCVTDSTSVITGTTGSTTRIASKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGGLRRGSPTFSRVGSGSFPRKRGGTSRNAAGKLPVRAVEAFELRDGRTILVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRCRLRQ 252
            MVSSGPFAGVISPELCWSAH NELRVHSTARLEPHAGHKTTGLPVQALFRFLSE ERER  GPV GTV P SNKRAKPLQPQTLALGSGAIGQSVCVTDS SVI GTTG+ TRI SKP                             GGG RRGSPTFSRVGSG FP KRGGTSRNAAGKL VRAVEAFELRDGRT+LVCLASEREL SEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRC  RQ
Sbjct:    1 MVSSGPFAGVISPELCWSAHENELRVHSTARLEPHAGHKTTGLPVQALFRFLSEQERERERGPVRGTVQPLSNKRAKPLQPQTLALGSGAIGQSVCVTDSRSVIRGTTGAATRIPSKPGTPDSPKDVAGISPQPGNGQRAATGSPPAGGGSRRGSPTFSRVGSGGFPTKRGGTSRNAAGKLSVRAVEAFELRDGRTVLVCLASERELHSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRCLSRQ 254

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig11833.2148.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig11833.2148.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KCT0_9PHAE	1.110e-123	81.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FN13_ECTSI	7.720e-121	80.71	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 220..241
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..219
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 242..252

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig11833	contig	Ecto-sp8_S_contig11833:942..2951 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig11833.2148.1	mRNA_Ecto-sp8_S_contig11833.2148.1	Ectocarpus species8 EcLAC_412	mRNA	Ecto-sp8_S_contig11833 942..3188 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp8_S_contig11833.2148.1 ID=prot_Ecto-sp8_S_contig11833.2148.1|Name=mRNA_Ecto-sp8_S_contig11833.2148.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=252bp
MVSSGPFAGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFR
FLSEPERERGPVHGTVLPPSNKRAKPLQPQTLALGSGAIGQSVCVTDSTS
VITGTTGSTTRIASKPGTTGSPKDAAGISPEPGNGQGAAAGSPPVGGGLR
RGSPTFSRVGSGSFPRKRGGTSRNAAGKLPVRAVEAFELRDGRTILVCLA
SERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRCRL
RQ