mRNA_Ecto-sp8_S_contig11833.2148.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11833.2148.1
Unique NamemRNA_Ecto-sp8_S_contig11833.2148.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11833.2148.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 392 bits (1006), Expect = 8.650e-123
Identity = 208/254 (81.89%), Postives = 211/254 (83.07%), Query Frame = 1 
Query:  238 MVSSGPFAGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERER--GPVHGTVLPPSNKRAKPLQPQTLALGSGAIGQSVCVTDSTSVITGTTGSTTRIASKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGGLRRGSPTFSRVGSGSFPRKRGGTSRNAAGKLPVRAVEAFELRDGRTILVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRCRLRQ 993
            MVSSGP AGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERER  GPV GTVL P NKRAKPLQPQ LALGSGA+GQSVCVTDSTSVIT TTG+ TRIASKP                            VGGG RRGSPTFSRVGSGSFPRKRGG SRNAAGKL VRAVEAFELRDGRT+LVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQ R CR RQ
Sbjct:    1 MVSSGPLAGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERERERGPVRGTVLLPQNKRAKPLQPQNLALGSGAMGQSVCVTDSTSVITSTTGAATRIASKPGTTGSPKDAADISPQPGNGQLVSAGSPPVGGGSRRGSPTFSRVGSGSFPRKRGGASRNAAGKLSVRAVEAFELRDGRTVLVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQGRHCRSRQ 254
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BLAST of mRNA_Ecto-sp8_S_contig11833.2148.1 vs. uniprot
Match: D7FN13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN13_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 5.830e-120
Identity = 205/254 (80.71%), Postives = 207/254 (81.50%), Query Frame = 1 
Query:  238 MVSSGPFAGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERER--GPVHGTVLPPSNKRAKPLQPQTLALGSGAIGQSVCVTDSTSVITGTTGSTTRIASKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGGLRRGSPTFSRVGSGSFPRKRGGTSRNAAGKLPVRAVEAFELRDGRTILVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRCRLRQ 993
            MVSSGPFAGVISPELCWSAH NELRVHSTARLEPHAGHKTTGLPVQALFRFLSE ERER  GPV GTV P SNKRAKPLQPQTLALGSGAIGQSVCVTDS SVI GTTG+ TRI SKP                             GGG RRGSPTFSRVGSG FP KRGGTSRNAAGKL VRAVEAFELRDGRT+LVCLASEREL SEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRC  RQ
Sbjct:    1 MVSSGPFAGVISPELCWSAHENELRVHSTARLEPHAGHKTTGLPVQALFRFLSEQERERERGPVRGTVQPLSNKRAKPLQPQTLALGSGAIGQSVCVTDSRSVIRGTTGAATRIPSKPGTPDSPKDVAGISPQPGNGQRAATGSPPAGGGSRRGSPTFSRVGSGGFPTKRGGTSRNAAGKLSVRAVEAFELRDGRTVLVCLASERELHSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRCLSRQ 254
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11833.2148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCT0_9PHAE8.650e-12381.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN13_ECTSI5.830e-12080.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11833contigEcto-sp8_S_contig11833:942..3188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size994
Hectar predicted targeting categoryother localisation
Exons3
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143242.5609236-CDS-Ecto-sp8_S_contig11833:941..10731681143242.5609236-CDS-Ecto-sp8_S_contig11833:941..1073Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11833 942..1073 -
1681143242.5702622-CDS-Ecto-sp8_S_contig11833:1736..23181681143242.5702622-CDS-Ecto-sp8_S_contig11833:1736..2318Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11833 1737..2318 -
1681143242.5788283-CDS-Ecto-sp8_S_contig11833:2909..29511681143242.5788283-CDS-Ecto-sp8_S_contig11833:2909..2951Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11833 2910..2951 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143242.587302-UTR-Ecto-sp8_S_contig11833:2951..31881681143242.587302-UTR-Ecto-sp8_S_contig11833:2951..3188Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11833 2952..3188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11833.2148.1prot_Ecto-sp8_S_contig11833.2148.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11833 942..2951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11833.2148.1

>prot_Ecto-sp8_S_contig11833.2148.1 ID=prot_Ecto-sp8_S_contig11833.2148.1|Name=mRNA_Ecto-sp8_S_contig11833.2148.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=252bp
MVSSGPFAGVISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFR
FLSEPERERGPVHGTVLPPSNKRAKPLQPQTLALGSGAIGQSVCVTDSTS
VITGTTGSTTRIASKPGTTGSPKDAAGISPEPGNGQGAAAGSPPVGGGLR
RGSPTFSRVGSGSFPRKRGGTSRNAAGKLPVRAVEAFELRDGRTILVCLA
SERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPRLALPSQSRRCRL
RQ
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mRNA from alignment at Ecto-sp8_S_contig11833:942..3188-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11833.2148.1 ID=mRNA_Ecto-sp8_S_contig11833.2148.1|Name=mRNA_Ecto-sp8_S_contig11833.2148.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2247bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11833:942..3188- (Ectocarpus species8 EcLAC_412)
AGCACGGCACACTACCAGCCACTCACCCGCAGTGGCTAGAGCCAACTGAA
TGCAGAGGACCGCCCCAAAAGATAAAGTTGTATGTGAGGCTTCTCTGCAC
AGATTTGCTCCCATTATTCAGAGAGCGCGCGAGAGTAGTCAATCCGTCTG
TTGCTGTCTCCGTTGACACCACATCACAGCATCGGCAGGGCAGCCCGCGG
CTGTTGCTTACAACACAGGTATCGAGCACCCGCAGGCATGGTCTCGTCCG
GTCCTTTCGCTGGAGTCATATCTCCTGAGGTATGTCGCACGTTATCGCAT
GCAGTTCACAGGAAATAGAAGCTGCTGCGGTGTGCAGCAGTTCTGATGTG
ATTTGAAAAATCGAGGCGAAATCGTTCTCTTCGCGGACCGCGTGGTGTGC
GTGTCGTGCACAGCGACCGCGTGCCCAAAGCATACCCATACATACGTGTA
TGCTTATCGTGTTGTCTGCTCTCGGAGTAGACGTGCCAAGAAGCATGGCT
AGGTTAGTATTGCAGGTGTGTTGCGCGCACGAAACAGTAGAGACAAGCTA
GTACTCGAATTTTTGAATTTGTGGTATGCATAGCCTAAGGTTGCGGAAGA
TACCACCCGTTTGGTAACATTTCTTCAGGTTTATCGTATGCGTACAACTG
CAGGCTGTAGTATGCGTACGAGAGGTCTGCTGTAAATGAGTCATGAATCA
ACAGGATTGATGTCAACACTGTGGTATTTTTCGAAGGTGCAGTTTTGAAG
AGGCTACGGCATCGTCTGTCACCCGCGTGAGACTACTTTCTCCTATGCAT
ATGAAACCAGACCCTCCGGCTGCCGCCGTTTGTAAGTTATTTTTTGTTCC
CGTGTCTTGTCTCTTCCCAGCTCTGCTGGTCGGCGCACGGCAACGAGTTG
CGCGTTCACAGCACCGCCCGTCTCGAGCCGCACGCGGGGCACAAGACCAC
CGGCCTGCCCGTACAGGCCCTCTTTCGCTTCCTTTCGGAGCCGGAACGGG
AACGAGGACCGGTTCACGGAACGGTCCTGCCCCCGTCAAACAAGAGGGCG
AAGCCTCTGCAGCCTCAGACTCTTGCCCTGGGCTCGGGAGCCATCGGCCA
AAGCGTCTGCGTGACGGATTCTACGTCTGTCATCACGGGCACGACAGGTT
CTACCACAAGAATAGCATCAAAACCCGGTACAACGGGCTCTCCCAAGGAC
GCGGCAGGCATTTCTCCTGAACCGGGAAATGGTCAAGGCGCCGCGGCGGG
ATCGCCGCCGGTTGGCGGAGGATTGAGGCGTGGTTCTCCTACCTTTTCTC
GCGTTGGGAGTGGCAGTTTCCCGAGGAAACGCGGCGGGACCTCCAGAAAC
GCGGCGGGAAAGCTGCCGGTTCGTGCCGTGGAGGCGTTCGAGCTGAGGGA
CGGCCGGACAATCCTGGTGTGCCTTGCTTCTGAGCGCGAACTTCCTTCGG
AGGTGCGGTGTTGCAGCCTGTTTGGTGACGGGGGTTCGATCGGTCCGCGT
GCTTGTTGCTCTATTTTCCGTTGTGGCTTGTCTCTAAGTTGTTCTTTGCC
CAAGTTCGTTTTTCTATGTATAGATGTCATTGGACGGTGTTCTTGCTTCT
CCCGAGCTATGTATATGCGAACCTCCGTCTTGCCCAGCTATGATCTGTTT
CGTTCTGAGTTGGCGCACAAAGCTGTTCGAGCTGTAAGACTTTCCGCCTT
AGGTTGTGATGGCGTCGACCGGTCATTTTGGCCTCTTCTTGTTGCTTCTG
TCACGGACGGCTCTATCTAGTCCTCTCTGATTGACTCGCTGTCAGGCTAC
AAAAAAGTCTTCCCGTTTTGGGCATTGAAAGCCAGGATATTTCTTGATAC
CACGGGTAGGGACAGCATGAGAGAGATTGCTCCCGCCCACCTGTTGTAAC
CGGCAAACTGCTCGCAACGGTACATATGCTCAGAGCCGCCAACGCTGGTG
AAAAGTAATTCGCTGGAAACTGCGTGGTCACGAATGCTCGGACACGGCAC
CGATTCAACGTTCACAGCGGTCCGCGCTGTTGTGAGTGTGGCCGCAGCGC
GTGCTACGTTTTCTTCCAAGCGGCAACGAACAACAGCTCGTGCTTTCTTT
GGCTGTTGCGCACAGGTCCACTGCGTCGATCCCTTCTCCGGAGAAACCCT
CCACGTGGCCACCGGACTGCCCATCCTTCTCACCAGCCTGGCGGTCGTGC
CCCGGCTAGCTCTCCCCAGCCAAAGCCGTCGTTGCCGTTTGCGTCAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11833:942..3188-

>mRNA_Ecto-sp8_S_contig11833.2148.1 ID=mRNA_Ecto-sp8_S_contig11833.2148.1|Name=mRNA_Ecto-sp8_S_contig11833.2148.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11833:942..3188- (Ectocarpus species8 EcLAC_412)
ATGGTCTCGTCCGGTCCTTTCGCTGGAGTCATATCTCCTGAGCTCTGCTG
GTCGGCGCACGGCAACGAGTTGCGCGTTCACAGCACCGCCCGTCTCGAGC
CGCACGCGGGGCACAAGACCACCGGCCTGCCCGTACAGGCCCTCTTTCGC
TTCCTTTCGGAGCCGGAACGGGAACGAGGACCGGTTCACGGAACGGTCCT
GCCCCCGTCAAACAAGAGGGCGAAGCCTCTGCAGCCTCAGACTCTTGCCC
TGGGCTCGGGAGCCATCGGCCAAAGCGTCTGCGTGACGGATTCTACGTCT
GTCATCACGGGCACGACAGGTTCTACCACAAGAATAGCATCAAAACCCGG
TACAACGGGCTCTCCCAAGGACGCGGCAGGCATTTCTCCTGAACCGGGAA
ATGGTCAAGGCGCCGCGGCGGGATCGCCGCCGGTTGGCGGAGGATTGAGG
CGTGGTTCTCCTACCTTTTCTCGCGTTGGGAGTGGCAGTTTCCCGAGGAA
ACGCGGCGGGACCTCCAGAAACGCGGCGGGAAAGCTGCCGGTTCGTGCCG
TGGAGGCGTTCGAGCTGAGGGACGGCCGGACAATCCTGGTGTGCCTTGCT
TCTGAGCGCGAACTTCCTTCGGAGGTCCACTGCGTCGATCCCTTCTCCGG
AGAAACCCTCCACGTGGCCACCGGACTGCCCATCCTTCTCACCAGCCTGG
CGGTCGTGCCCCGGCTAGCTCTCCCCAGCCAAAGCCGTCGTTGCCGTTTG
CGTCAA
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