prot_Ecto-sp8_S_contig1108.1452.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig1108.1452.1
Unique Nameprot_Ecto-sp8_S_contig1108.1452.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length266
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1108.1452.1 vs. uniprot
Match: D7FK82_ECTSI (Pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK82_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 2.550e-154
Identity = 238/265 (89.81%), Postives = 244/265 (92.08%), Query Frame = 0 
Query:    1 MLRARTLATQCLRREAAARSRCSGRSAGAACAAAMPTPGSSRVVHAGCTLRRCLRSDATAAAAATTQSDGSGGLMQHSHVAAQGSQEAGALRTAPAPDPALRFDFDDDVAGLVARLNYLGTHSGDDSNHNNGASAAQEGLQLLQAARSRGMKNARLYKAVFKLLSVNTDAAVISSLWEQMKQDGIKPDVETYNLIIYGYASSKDVDGARRAYEELLSSGLEANETTLSNMVVANLWKDRAEMIRCGSAGGTHTAPGCCTVVSSPL 265
            MLRARTLA QCLRREAAARSRCSGRSAGAACAAAMPTPGSSRVVHAGCTLRRCL+SDA  AA ATTQSDGSGGLMQHS VAAQGSQEAGALRTAPAPDPALRFDFDDDVAGLV RLNYLGT + D+SN NNGASAA+EGLQLLQAARSRG K+ARLYKAVFKLLSVNT+AA ISSL EQMKQDGIKPDVETYNLIIYGYASSKDV GARR YEELLSSGLEANETTLSNMVVAN WKD  EM R GSAGGTHTAPGCCTV  SPL
Sbjct:    1 MLRARTLAAQCLRREAAARSRCSGRSAGAACAAAMPTPGSSRVVHAGCTLRRCLQSDAPGAATATTQSDGSGGLMQHSDVAAQGSQEAGALRTAPAPDPALRFDFDDDVAGLVERLNYLGTQNRDNSNRNNGASAAKEGLQLLQAARSRGTKDARLYKAVFKLLSVNTNAAAISSLSEQMKQDGIKPDVETYNLIIYGYASSKDVAGARRTYEELLSSGLEANETTLSNMVVANSWKDIDEMRRFGSAGGTHTAPGCCTVEFSPL 265
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BLAST of mRNA_Ecto-sp8_S_contig1108.1452.1 vs. uniprot
Match: A0A6H5KYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.420e-9
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 0 
Query:  140 LQLLQAARSRGMKNARLYKAVFKLLSV----NTDAAV-ISSLWEQMKQDGIKPDVETYNLIIYGYASSKDVDGARRAYEELLSSGLEANETTLSNMVVAN 234
            +Q+L   R +G+K   +YKAV K L      + DAA  +  + E+M++DG++PDV TYN I+  +A   + + A   YEE+LS G+E N+ T S+M+VA+
Sbjct:  138 IQILDEGRQQGIKELVVYKAVLKQLLTTYRESKDAAQNLERVIERMEEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVEPNQRTASHMIVAH 237
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BLAST of mRNA_Ecto-sp8_S_contig1108.1452.1 vs. uniprot
Match: D8LG81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.460e-9
Identity = 41/100 (41.00%), Postives = 65/100 (65.00%), Query Frame = 0 
Query:  140 LQLLQAARSRGMKNARLYKAVFK-LLSV---NTDAAV-ISSLWEQMKQDGIKPDVETYNLIIYGYASSKDVDGARRAYEELLSSGLEANETTLSNMVVAN 234
            +Q+L   R +G+K   +YKAV K LLS    + DAA  +  + E+M++DG++PDV TYN I+  +A   + + A   +EE+LS G+E N+ T S+M+VA+
Sbjct:  138 IQILDEGRRQGIKELVVYKAVLKQLLSTYGESKDAAQNLERVLERMEEDGLQPDVTTYNHILDFHALLHNSEAAVAVHEEMLSRGVEPNQRTASHMIVAH 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1108.1452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK82_ECTSI2.550e-15489.81Pentatricopeptide (PPR) repeat-containing protein ... [more]
A0A6H5KYF7_9PHAE1.420e-940.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG81_ECTSI3.460e-941.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 125..240
e-value: 3.7E-9
score: 36.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 104..256
e-value: 2.6E-17
score: 65.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 191..223
e-value: 2.5E-6
score: 25.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..187
score: 7.541
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 10.852
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 140..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1108contigEcto-sp8_S_contig1108:259..7664 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1108.1452.1mRNA_Ecto-sp8_S_contig1108.1452.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig1108 259..7664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig1108.1452.1 ID=prot_Ecto-sp8_S_contig1108.1452.1|Name=mRNA_Ecto-sp8_S_contig1108.1452.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=266bp
MLRARTLATQCLRREAAARSRCSGRSAGAACAAAMPTPGSSRVVHAGCTL
RRCLRSDATAAAAATTQSDGSGGLMQHSHVAAQGSQEAGALRTAPAPDPA
LRFDFDDDVAGLVARLNYLGTHSGDDSNHNNGASAAQEGLQLLQAARSRG
MKNARLYKAVFKLLSVNTDAAVISSLWEQMKQDGIKPDVETYNLIIYGYA
SSKDVDGARRAYEELLSSGLEANETTLSNMVVANLWKDRAEMIRCGSAGG
THTAPGCCTVVSSPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat