mRNA_Ecto-sp8_S_contig1108.1452.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1108.1452.1
Unique NamemRNA_Ecto-sp8_S_contig1108.1452.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig1108.1452.1 vs. uniprot
Match: D7FK82_ECTSI (Pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK82_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 2.550e-154
Identity = 238/265 (89.81%), Postives = 244/265 (92.08%), Query Frame = 1
Query:    1 MLRARTLATQCLRREAAARSRCSGRSAGAACAAAMPTPGSSRVVHAGCTLRRCLRSDATAAAAATTQSDGSGGLMQHSHVAAQGSQEAGALRTAPAPDPALRFDFDDDVAGLVARLNYLGTHSGDDSNHNNGASAAQEGLQLLQAARSRGMKNARLYKAVFKLLSVNTDAAVISSLWEQMKQDGIKPDVETYNLIIYGYASSKDVDGARRAYEELLSSGLEANETTLSNMVVANLWKDRAEMIRCGSAGGTHTAPGCCTVVSSPL 795
            MLRARTLA QCLRREAAARSRCSGRSAGAACAAAMPTPGSSRVVHAGCTLRRCL+SDA  AA ATTQSDGSGGLMQHS VAAQGSQEAGALRTAPAPDPALRFDFDDDVAGLV RLNYLGT + D+SN NNGASAA+EGLQLLQAARSRG K+ARLYKAVFKLLSVNT+AA ISSL EQMKQDGIKPDVETYNLIIYGYASSKDV GARR YEELLSSGLEANETTLSNMVVAN WKD  EM R GSAGGTHTAPGCCTV  SPL
Sbjct:    1 MLRARTLAAQCLRREAAARSRCSGRSAGAACAAAMPTPGSSRVVHAGCTLRRCLQSDAPGAATATTQSDGSGGLMQHSDVAAQGSQEAGALRTAPAPDPALRFDFDDDVAGLVERLNYLGTQNRDNSNRNNGASAAKEGLQLLQAARSRGTKDARLYKAVFKLLSVNTNAAAISSLSEQMKQDGIKPDVETYNLIIYGYASSKDVAGARRTYEELLSSGLEANETTLSNMVVANSWKDIDEMRRFGSAGGTHTAPGCCTVEFSPL 265          
BLAST of mRNA_Ecto-sp8_S_contig1108.1452.1 vs. uniprot
Match: A0A6H5KYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.420e-9
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  418 LQLLQAARSRGMKNARLYKAVFKLLSV----NTDAAV-ISSLWEQMKQDGIKPDVETYNLIIYGYASSKDVDGARRAYEELLSSGLEANETTLSNMVVAN 702
            +Q+L   R +G+K   +YKAV K L      + DAA  +  + E+M++DG++PDV TYN I+  +A   + + A   YEE+LS G+E N+ T S+M+VA+
Sbjct:  138 IQILDEGRQQGIKELVVYKAVLKQLLTTYRESKDAAQNLERVIERMEEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVEPNQRTASHMIVAH 237          
BLAST of mRNA_Ecto-sp8_S_contig1108.1452.1 vs. uniprot
Match: D8LG81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.460e-9
Identity = 41/100 (41.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  418 LQLLQAARSRGMKNARLYKAVFK-LLSV---NTDAAV-ISSLWEQMKQDGIKPDVETYNLIIYGYASSKDVDGARRAYEELLSSGLEANETTLSNMVVAN 702
            +Q+L   R +G+K   +YKAV K LLS    + DAA  +  + E+M++DG++PDV TYN I+  +A   + + A   +EE+LS G+E N+ T S+M+VA+
Sbjct:  138 IQILDEGRRQGIKELVVYKAVLKQLLSTYGESKDAAQNLERVLERMEEDGLQPDVTTYNHILDFHALLHNSEAAVAVHEEMLSRGVEPNQRTASHMIVAH 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1108.1452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK82_ECTSI2.550e-15489.81Pentatricopeptide (PPR) repeat-containing protein ... [more]
A0A6H5KYF7_9PHAE1.420e-940.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG81_ECTSI3.460e-941.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1108contigEcto-sp8_S_contig1108:259..7664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.6
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog2880.D8LG81
Model size798
Hectar predicted targeting categorymitochondrion
Exons4
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size798
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143192.2146358-CDS-Ecto-sp8_S_contig1108:258..4631681143192.2146358-CDS-Ecto-sp8_S_contig1108:258..463Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1108 259..463 -
1681143192.2252903-CDS-Ecto-sp8_S_contig1108:1911..20181681143192.2252903-CDS-Ecto-sp8_S_contig1108:1911..2018Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1108 1912..2018 -
1681143192.2347403-CDS-Ecto-sp8_S_contig1108:2260..25151681143192.2347403-CDS-Ecto-sp8_S_contig1108:2260..2515Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1108 2261..2515 -
1681143192.2446501-CDS-Ecto-sp8_S_contig1108:7433..76641681143192.2446501-CDS-Ecto-sp8_S_contig1108:7433..7664Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1108 7434..7664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1108.1452.1prot_Ecto-sp8_S_contig1108.1452.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1108 259..7664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1108.1452.1

>prot_Ecto-sp8_S_contig1108.1452.1 ID=prot_Ecto-sp8_S_contig1108.1452.1|Name=mRNA_Ecto-sp8_S_contig1108.1452.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=266bp
MLRARTLATQCLRREAAARSRCSGRSAGAACAAAMPTPGSSRVVHAGCTL
RRCLRSDATAAAAATTQSDGSGGLMQHSHVAAQGSQEAGALRTAPAPDPA
LRFDFDDDVAGLVARLNYLGTHSGDDSNHNNGASAAQEGLQLLQAARSRG
MKNARLYKAVFKLLSVNTDAAVISSLWEQMKQDGIKPDVETYNLIIYGYA
SSKDVDGARRAYEELLSSGLEANETTLSNMVVANLWKDRAEMIRCGSAGG
THTAPGCCTVVSSPL*
back to top

mRNA from alignment at Ecto-sp8_S_contig1108:259..7664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1108.1452.1 ID=mRNA_Ecto-sp8_S_contig1108.1452.1|Name=mRNA_Ecto-sp8_S_contig1108.1452.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=7406bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1108:259..7664- (Ectocarpus species8 EcLAC_412)
ATGCTGCGGGCACGGACGCTTGCTACGCAATGCCTACGACGGGAGGCTGC TGCGCGCTCTAGATGCAGCGGGAGGAGCGCTGGAGCGGCGTGTGCAGCTG CTATGCCAACACCCGGCAGCAGCAGGGTTGTACATGCCGGATGCACGCTG CGGCGGTGTCTTCGATCAGACGCAACAGCAGCGGCGGCAGCGACGACTCA GAGCGATGGGAGCGGAGGTCTAATGCAGCATGTGAGAAAGACAAACGAAC GGGTTGCCACGTCACCGCGACATCTAAATGAGGCAGCTTTTTGTCTGCGA ACGAGTAGTCAAGATGGAGCGTGTTTGTGTGTTCCTCTCTCTACCCAGAC CCGCATTGAACAAGAGCGGCTGCCATGCTTGGCACCTCCAGCCTTCACTT TCGACTGCTGCAGCAACCCCAGGCTCCAGCCTTTACCTCGTGCGCCCAGT CTGAAGACTTTGCAGACTTTGAACTTTTCAGTGCACATTCAACCGCCCAC GGGCTGTACAGACCGTCTCCGAGACAGCTCTTTCATCCAGTGGCCGCACA CCTGTCTGGAGTGCCACAGGAACGAAGAGCTTTTCATTTCGCGGGGTCGC CGAAAAGGGTGGATCGCTCTCGCACTCGAACGAGTCTGTAGTGTGCAGCC TGCCGCAACTTCACTGTTTAGCTGTGAGAAAGCTGCGCATGGTATCACTC GCTCCGTCGCTACATGAACGGCATGACTGGCCGTCTGCTCCGGGTCTGCC ATTGTACAGCAGACATGGCCCACTGCATTACATATTCCACTTAAATTACC GCAAGATCCCTGTACATGAGCCGGCGGCCCCCACCCCCCACCCCTCCCTC ACCAGAAACACGAGGTGGGTGTACCCAGCGCTGTCTGTGTCTTGTCTGCT GTGTCTGTCTGTGTAGCCCTTGTGCGAGGCCTGCGTGCTCCTCCATTGAC CTATAGGGATGCTGCTTGTTTTTTTCCCCACTTTTGACGGGTTGGTTGCT GTTTGTGCTGACTACTTTCACTAAACCGTACTTGAAGTACACACACATTC TTCCTACACGTAATTGGCAAACAATCGGAATAAAATCAGTTGATCCGTAC ACATGCATAGATAATCTCTGAGGCAGCAGATAGACTCAAGCAGTATGTAC CCGAAGCATAGCCTACGTTTTGTGTATGTGGCTAGCTCTCACCCTCAATC ACAATGCCCGGGTTTCGGTGTACAAGTACAGCACCTTTTGGGGAATTTTT CGAATTTGTTGTGAGTTCGACAATTTTGAGACAGGAATTCCCATCAATAA GGATCTGCGGTCACATGCGCACAACAGATGTCAATGCGCCACTACGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG TTGTTGTCTTTACATTAAATTCGTGTCAGTTGCTAATCCCAAAATCTAGC AAAGACGCGGTCCGTGGTCACAAAAATGTTAAGAGCCATCAGAAGATCTA AAGAACACGCAAACTAGCAAGAAAAGGGTACACAAGCCCGAAGAGGTACA CCTGTACATCCCTGCAGCACGTTTGCGTGCCCAAAACTGAACTACCCGTC CACACACTATATCCGACTAGCAGCATCATCCCCCCTTCAAATACCAAAAT GAATGTTTGTCGACTACAGCGTACAACTGTCTGGAGTGCTGCCAGTGCAA TAGCACCATGGTGGGCATGGTCACAAGTTCGGGGCGCGCAACTGCTGTCT AAAGTGCTGTCAGAATGCGTCCGTGGACATACAGTGAAAAAGCACACCCA ACCAAAGCCATCATTGCAATTGACAATCACCGAATATCTACCCCCGCATC ATCTTTTTGTGTGTGTGTTGGACACAGCAGTGATAATAATCGACACTGAC TAGGAATCGTTCCACACTGAAGGGAGGGGTTTTCAATGATGCAGGTACAC AATAAAGGCACCCGGGGTATCCGCGCCATCTCTGCCGCGTCTCTCTACAA AACCAGTGACTTCATTACATACACCCAACATCGATGTTCAGGACAAAACG GAAAATATTTGACAACACAAAATGATCGTCCGTGCGTCACGGTTCGACGT CGTCCGTGTGCTCCGGTGCCGCTGCTCCGGTGTCGCTGCGGCCAGTCCTA GCACGACCAAACTCGACCCGCTCCGTCCGTACACGCTCTCGTTGCTGTCC TTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTGGGGTTCTTGGT CTGAAAATTCTGGCGCCGAAGGGTCAACCAGCCCACTCAGCTCGTCACCA CCTGTTCCCTCCTCCCCTTTGATGGCAAAGCCAGGTTACTGAGACAGTAC AGCTCCCTCTAGCAAACCGAGGGCCGTGCACATAGTGTCCGTCCACCTTT CTGATGGTGTCTGCCTCCGCGCACAAAACTGAGATGGACATTGCTGTCTA CACCGACGGCCATGAGGCCCGCGCATCTGCATTTTTGTACCTGACGCACC AGTGCCGACCCAACTCTACCACTACGCACGCCTCGCGGTGGGTGCGCCGT AGCAAGAAGGTATCGGTCCCTTGAGGGTGAGTCTAGCCATGCTCGCTAGA AAGACCCCCCCCCTCGCTATGGACCATGCCTAAGCAAAACTACGTAGTGC CACTGATTTGCCGGGAATGTTCGTTCCCGAAATATTATGTTTCCGGCAAC ACACGTACGTACTTCCCCCAGAATTCTCTCGAGATGGTGGCTGCTGTGTG GTGTCACGTTCATTTTTTCTAAAAGGTTTAACGAGTTATACGCAGCAGTC TACCCCGCTTTAAAGACAAGCCACGTTTTTTTTTTCCCGAGTGTCTTTAA CGCGGGGAAGTGTCTTGAGATTCCGGGGCCAATAACTCAACGCCCTCGGG GCCAATGTTGGCGAAACATATATGTCAAAAGACGCGCATACGCAGCAGAA ATGCGACCACAAAACGGCGCTGTTGGAAACCTACGACAAAACGTGATTTG AAGGCCGCAACTACTGCTGTTGAACTCCAATACTGCTATACATAGTTTGA ATTTTCCCCTAACACCGAAACGTGGGCAAGGGTGCAGCACGACTCGTTGT AACGTGTACGGTAGTGCGCTGGTGTTGTTGCAGGTTTTACTATTGTTGAG GCGTTGTCCTCACGGTGAACATCTTGCCCGAGATCTCGCTACCGCACCTG AGAAACATTAGCTGTTGGAACCAACTCTGATACGATACAAGCAGGCTACC TGCCACATGGGGACCAAACAAAACCACCCACACTTTTGAAGGACACTAGG AAAATGTCGGTAACGCAGACAACACCAGACAAAATAATCTGGAAAGTACA CCGAAAAAGAGGACACCGCTTCTCACCAAAGGTCAAATCGAGGCAAAACA CAAAACAAATTATGCCAAATTTAACTTCACGAGACTTCACCCGAGGCAAA CAAATAACACCAAACAACGAACGAACGTGGACATCCAAAGTGCAGTTGTT CTAAAAAAAAAAAAGCTACGCCGCCCACATATCCCGAAGAGTCGCCTGCA CCTCGCCCCCCTCCTTCGCTCTTCTTTTTGACTTGAGTTTCATGAGTTCA GTTCCTAATTATACCCAAGGCAACATCTGCTGCTGCTGCTGTTCCACAAG AGTGATAACAAGTGAGTTCTTCTTCACGGGCCTACTAGATTGCACCACGC GTGATACCTTTACACTTGGCGTCGTCGACAGGAGGTACCCACGGCTTCGG CCGCCGCGCTGCTTCGGCGGCCGCTCCCGCTGACCCTCTGCCGCCACTGC AATGCCCGCGGTGGTTCAGTACTTTTGGTGTGGGATAGCATAGCTCGCTT GCACCGACTTGGTGTGGGATAGCATGGATCTCGTCCGTGCAGAGTATGGC CAACAGCCTTGAAGCTCTTGAAGCTCTTGAAGCTCTTGAAGCTCTTGAAG CTCTTGGCGATACTCCGCACCAGGGAGATTGTCCTGCGTCTGGGCGACCG CTGCACGGTCGACGTCGACAGCCTCGCCGATCTCCCGACGAACCTCGTCG GTGCCAGCGAGCAGTCGTTGCGACTGAATCCATGCTATATATCCCATACC AAAGTACTGAACCACCGCCTTCTAGAAGGTGCGGGAAGATGCAACTCCCC GCGGAAGGATAAAACAGGGAACAGGATCAGAGTAGCCCCTGCTTGAGCAG AGGATCCGTCCCCCCCACTTCAGTTCCTACCGATACCCAAGGCAACATCT GCTGCTGCTGCTGCTGTTCCACACAATGACAAGCAATAGCAAGTGTGTTC TTCTTCACGGGTCTCCTAGGTTGCACCACGCGTGCGTACCTTTTGCACGT GCGGCGGCAATAGGAGAGGTTTTTCATCGCCAGCTGCTCGGCGGCGCGCA ACCCTGCACCCGAATGGTCGAAGTAGCGGGTACGCGTAGATTTTGGCCCG ACTCCCCGTTCCACCCGCCACCGCAGTGCAGTCCGAAGCACACTTTGCTG CAAAAGATGTCTGCACGGGGGGAGGGGGGGGAGACAGCGAGGAAGGGGAA ACAGCAGTCAATCCCCCTCCCAAGCCGTAATATGTGCGCACAATACTTTA TTGCAACAGCGGTACCGACCACGGTTTCATCCCTTTTTTTGGCACAGTGA AAGTTGCTGTAGCAGTTGCTCCAATTCCTATCAATCATGCAGCGTAGTCC TCGTATCCACTGAGTCTAATTTGCTCTGTACGGCTATTACAACGGCACTG CTCGAGCCGTTTCTCCCCTACAACGCGAGCTACTGCGTTTGTTAAAGGCC GCAGAAGGCACATGTTCCGTCCTCGTACTCTTCCGTTCGTTCGGCACTCG ATTGTTGTGCAGGCGCGTCTCTCTCAGTTGTTCTTCCCTTCAACTTCGCT TCTTTTTCTTGCTTAATTGCACAACAAATCTGTCTCCTCCACAGAAAAGA ATGTGGCATAGAATAGCAATGAACCCATAGCGTCAGTGGAAGATACCCGT GTTTCTACGGTTCCGGAGCAGCATATCGCGAAATCTCCCTTTTTTGCTAC TTTGATTTTTCTGTTTTTTGTTTATTTTGATCTATTTCGCACGCTTGCAC GTCCTATCCCCCGGTTTATTTTCTTTTTTCGCTCTCTGTCGGGAAAAAGA GTCACGTTGCTGCGCAAGGATCCCAAGAGGCAGGCGCATTGAGAACAGCA CCAGCACCAGACCCGGCTCTCCGGTTCGATTTCGACGACGATGTTGCCGG GCTGGTAGCGCGGCTCAACTACCTCGGGACACATAGCGGCGACGATAGCA ACCATAACAACGGGGCAAGCGCAGCTCAGGAGGGGTTGCAGCTGCTCCAG GCAGCGCGCAGCAGAGGGATGAAGAACGCCCGGTTGTACAAGGCGGTTTT CAAGGTTCGTCAAGCTTTGAAGACTGCTTAGCAGTGGTACACAGCACAGC AGTAACGGTCGTTTCGCTCGTCGTCTTCATCACCATCATGGATAGCAGTA GCAAGATTGAGAACAGTAGTGGCAGCAGCAGCAGCGGCAACGACGACGAC AACATCAACAGCAACAACAAGTTATAACATGCTTTAGTTTCCCCCGCGCT CTGTGTGCGTTTATTCTGTTCGGACCTCTCTTCTCTCTCTGCACAGCTGC TGTCGGTGAACACCGACGCCGCGGTGATCAGCAGCCTCTGGGAACAGATG AAGCAAGACGGGATCAAGCCTGACGTGGAAACTTACAACTTGATCATCTA CGGGTAAGAACCATACGAACTGCTATTGTTGTGTTGTACTCATTGCCGTC TACTCCGGTCGCTAGTGTTGCATACGCCTTTTACGCCGCACCAGCAGGGG CCACTCAGACAGGATAAAGGTTCCTCCTTACGGGTGCAGTGCCGATTTGG GGGCCGTCTTTGTCGACACCGCTGTTGGACTGCTTCCCGCCTAGCCTGCG TACTGTTGTCGTTGTTGTCGTTGTTGTTGTTGGTATTGTCTGCACATTAA AAACCGTTCCGGTCTTCGCTCAGACTAGTGTCCGTACTGGTGCAACTGAT GCGGACGACGCCTTCCGTGGTCACAAGCCAACTACACCCCCCCAAAAAAT TGAGTGTACGCAATTGTAGAATTGATAAAAAAAAAAACTGATGGTGCGAG GTTCCCCCCAAACTGACCACCCTAACGCGTCTCAGTAGGCCGCGTTTTGG GTGAGGACAGTTTCTGGTTCCTCTGTGGCCTTCACCGCGGATTACATTGT AGTATGGTCCGTTCCGCATTCACTATATACAGCAGTTCGTACTGACTGTG CAGTTTTTATTGTATCTTGTGCAACGATTTTGTTGACGCGGCGCAAATAC TAGCATGAAGACGCCCGTTTGCAAAACCCCACGTGAGGTGAAACAGTTCC TAACCACATGCCATGCGGCTAAATACTACCATACACGAGCAGCACGGACT AAATAGAACGTTTCGTTGGCAAACGATTCCTCCCATGCAGGTGCTCCAGC AGCAGGGACTACTACGGTTGGATGCTGCTGTTGGTAGTCAATAAAAAAAT TGAGCACCATTTGTGAGCTCGACTAAGAACTCCTATACTAAAACCTATAT AGCGACCATTCGTCGCGCATGACCCTAGATAGGAATACAGCAAGAACCCC AGTCTCGGCTCAAACTCCGTATGTGCACCACCACATAGGAACTCAGGAGC CAAGATATTGAGCCTCGAAAATATCGAAATTTAAGAACTCGAGGACCATT TGCGAGCTCGACTAAGAACTCCCACACTAAAACCTATATAGCGACCATTC GTAGCATGACCCTAGGAATACAGTAAGAACCTCAGCCCCGGCCGAAACTA TGATAGAGGTTCTGTGGGGCGGGCGCCTTCGGCTGTAAGACTTTCTGCAT ATTTTCTATGCGGGTACGGGAGCAGCAGGGGCTAATGTAGCATCTGGTCG ACAGCCGTTCCTCCTGCGTGCCATGTAAAAAGGTGCTCGAGCAGCAGCGA TTGTGATTTCGTTGACTACAATACTGTGTTAGCACCTTTCTAAAATATGA CATGGGCGTGCAGGTACGCGAGCAGCAAGGACTAGAATCATCTCGTTGAC AGTAGTTCCTCTTATGTGCCATGTAGGTGCTCGAACAGCAGCGGCTATTA TTATTATTCCGTTGACTATAATACAAACCTGAAACATGACCTGTCATGCA GGTACGCGAGTAGCAAGGACGTGGACGGGGCGCGACGGGCGTACGAAGAG CTGCTATCGAGCGGCTTGGAAGCGAACGAAACGACGCTGTCCAACATGGT CGTCGCTAACTTGTGGAAGGACAGGGCCGAAATGATAAGGTGTGGCTCTG CTGGTGGAACACATACCGCCCCAGGCTGTTGTACGGTAGTCTCCTCCCCG CTTTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1108:259..7664-

>mRNA_Ecto-sp8_S_contig1108.1452.1 ID=mRNA_Ecto-sp8_S_contig1108.1452.1|Name=mRNA_Ecto-sp8_S_contig1108.1452.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1108:259..7664- (Ectocarpus species8 EcLAC_412)
ATGCTGCGGGCACGGACGCTTGCTACGCAATGCCTACGACGGGAGGCTGC
TGCGCGCTCTAGATGCAGCGGGAGGAGCGCTGGAGCGGCGTGTGCAGCTG
CTATGCCAACACCCGGCAGCAGCAGGGTTGTACATGCCGGATGCACGCTG
CGGCGGTGTCTTCGATCAGACGCAACAGCAGCGGCGGCAGCGACGACTCA
GAGCGATGGGAGCGGAGGTCTAATGCAGCATAGTCACGTTGCTGCGCAAG
GATCCCAAGAGGCAGGCGCATTGAGAACAGCACCAGCACCAGACCCGGCT
CTCCGGTTCGATTTCGACGACGATGTTGCCGGGCTGGTAGCGCGGCTCAA
CTACCTCGGGACACATAGCGGCGACGATAGCAACCATAACAACGGGGCAA
GCGCAGCTCAGGAGGGGTTGCAGCTGCTCCAGGCAGCGCGCAGCAGAGGG
ATGAAGAACGCCCGGTTGTACAAGGCGGTTTTCAAGCTGCTGTCGGTGAA
CACCGACGCCGCGGTGATCAGCAGCCTCTGGGAACAGATGAAGCAAGACG
GGATCAAGCCTGACGTGGAAACTTACAACTTGATCATCTACGGGTACGCG
AGTAGCAAGGACGTGGACGGGGCGCGACGGGCGTACGAAGAGCTGCTATC
GAGCGGCTTGGAAGCGAACGAAACGACGCTGTCCAACATGGTCGTCGCTA
ACTTGTGGAAGGACAGGGCCGAAATGATAAGGTGTGGCTCTGCTGGTGGA
ACACATACCGCCCCAGGCTGTTGTACGGTAGTCTCCTCCCCGCTTTAA
back to top