prot_Ecto-sp8_S_contig10936.1309.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10936.1309.1
Unique Nameprot_Ecto-sp8_S_contig10936.1309.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length69
Homology
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 8.090e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 69
            RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF
Sbjct:   39 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 107          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.900e-38
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 69
            +TIVS LVAYVPE+EMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF
Sbjct:  163 KTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 231          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: D7FLX4_ECTSI (Alpha,alpha-trehalase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.220e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0
Query:    2 TIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS 51
            TIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS
Sbjct:  326 TIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS 375          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A2V0P7W7_9CHLO (tRNA-binding domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7W7_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 2.360e-24
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 69
            RTIVSGLV +VP +EM+GR VV LCNL  R MRGV S+GMLLCASND H  V+PL+PPEGA +GE + F
Sbjct:   85 RTIVSGLVEFVPLEEMQGRSVVVLCNLKPRNMRGVKSNGMLLCASNDAHDKVEPLAPPEGAAVGERVWF 153          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 101 bits (251), Expect = 3.850e-24
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELIT 68
            RTIVSGLV YVP DEM GR VV LCNL  RAMRGVTS GMLLCASN+DH+ VDPL+ PE   IG LIT
Sbjct:  208 RTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTEVDPLTAPEDTPIGTLIT 275          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 100 bits (248), Expect = 4.370e-24
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 69
            RTIVSGLV Y+P ++M GR VV LCNL  RAMRGVTS GMLLCASN+DH+ VDPL  P+   IGEL+TF
Sbjct:  153 RTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTF 221          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 98.6 bits (244), Expect = 2.060e-23
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 69
            RTIVSGLV ++ E+E+ GR VV LCNL  R MRG+ S GMLLCASN DHS VDPLSPPE    GELITF
Sbjct:  164 RTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITF 232          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A3M7KVY0_AUXPR (tRNA-binding domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KVY0_AUXPR)

HSP 1 Score: 94.7 bits (234), Expect = 4.660e-23
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 69
            RTIVSGLV +VP +E+ GR VV L NL  R MRG+ S+GMLLCASN +H+ V+PL PPEGA++GE + F
Sbjct:   34 RTIVSGLVKFVPREELEGRQVVVLANLKPRNMRGIKSAGMLLCASNSEHTEVEPLLPPEGAQVGERVWF 102          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 96.3 bits (238), Expect = 8.780e-23
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 69
            R IVSGLV++VP +EM  R V+ LCNL  R MRG++S GMLLCASN+DHS VDPL+ PEG  IG L+TF
Sbjct:  131 RVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTF 199          
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 95.1 bits (235), Expect = 1.500e-22
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 69
            RTIVSGLV ++ ++E+ GR V+ LCNL  RAMRG+ S GMLLCASN+DH+ VDPL+ P  A IG LITF
Sbjct:  106 RTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITF 174          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCD4_9PHAE8.090e-42100.00tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
D7FK87_ECTSI5.900e-3895.65Similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
D7FLX4_ECTSI1.220e-24100.00Alpha,alpha-trehalase n=1 Tax=Ectocarpus siliculos... [more]
A0A2V0P7W7_9CHLO2.360e-2468.12tRNA-binding domain-containing protein n=1 Tax=Rap... [more]
A0A7S1TKX4_9RHOD3.850e-2475.00Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A2V3IUX7_9FLOR4.370e-2469.57Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S0FZY8_9RHOD2.060e-2369.57Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A3M7KVY0_AUXPR4.660e-2362.32tRNA-binding domain-containing protein n=1 Tax=Aux... [more]
A0A5J4Z2W6_PORPP8.780e-2365.22Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
A0A7S0ZE83_9RHOD1.500e-2263.77Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..69
e-value: 5.5E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR11586FAMILY NOT NAMEDcoord: 1..69
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 1..65
e-value: 2.2E-16
score: 59.8
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 1..68
score: 17.192
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10936contigEcto-sp8_S_contig10936:98..1167 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10936.1309.1mRNA_Ecto-sp8_S_contig10936.1309.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10936 98..1167 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10936.1309.1 ID=prot_Ecto-sp8_S_contig10936.1309.1|Name=mRNA_Ecto-sp8_S_contig10936.1309.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHS
SVDPLSPPEGAKIGELITF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold