mRNA_Ecto-sp8_S_contig10936.1309.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10936.1309.1
Unique NamemRNA_Ecto-sp8_S_contig10936.1309.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 8.090e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 207
            RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF
Sbjct:   39 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 107
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BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.900e-38
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 207
            +TIVS LVAYVPE+EMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF
Sbjct:  163 KTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 231
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BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: D7FLX4_ECTSI (Alpha,alpha-trehalase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.220e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    4 TIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS 153
            TIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS
Sbjct:  326 TIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS 375
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BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A2V0P7W7_9CHLO (tRNA-binding domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7W7_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 2.360e-24
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 207
            RTIVSGLV +VP +EM+GR VV LCNL  R MRGV S+GMLLCASND H  V+PL+PPEGA +GE + F
Sbjct:   85 RTIVSGLVEFVPLEEMQGRSVVVLCNLKPRNMRGVKSNGMLLCASNDAHDKVEPLAPPEGAAVGERVWF 153
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BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 101 bits (251), Expect = 3.850e-24
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELIT 204
            RTIVSGLV YVP DEM GR VV LCNL  RAMRGVTS GMLLCASN+DH+ VDPL+ PE   IG LIT
Sbjct:  208 RTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTEVDPLTAPEDTPIGTLIT 275
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BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 100 bits (248), Expect = 4.370e-24
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 207
            RTIVSGLV Y+P ++M GR VV LCNL  RAMRGVTS GMLLCASN+DH+ VDPL  P+   IGEL+TF
Sbjct:  153 RTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTF 221
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BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 98.6 bits (244), Expect = 2.060e-23
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 207
            RTIVSGLV ++ E+E+ GR VV LCNL  R MRG+ S GMLLCASN DHS VDPLSPPE    GELITF
Sbjct:  164 RTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITF 232
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A3M7KVY0_AUXPR (tRNA-binding domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KVY0_AUXPR)

HSP 1 Score: 94.7 bits (234), Expect = 4.660e-23
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 207
            RTIVSGLV +VP +E+ GR VV L NL  R MRG+ S+GMLLCASN +H+ V+PL PPEGA++GE + F
Sbjct:   34 RTIVSGLVKFVPREELEGRQVVVLANLKPRNMRGIKSAGMLLCASNSEHTEVEPLLPPEGAQVGERVWF 102
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 96.3 bits (238), Expect = 8.780e-23
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 207
            R IVSGLV++VP +EM  R V+ LCNL  R MRG++S GMLLCASN+DHS VDPL+ PEG  IG L+TF
Sbjct:  131 RVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTF 199
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 95.1 bits (235), Expect = 1.500e-22
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITF 207
            RTIVSGLV ++ ++E+ GR V+ LCNL  RAMRG+ S GMLLCASN+DH+ VDPL+ P  A IG LITF
Sbjct:  106 RTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITF 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10936.1309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCD4_9PHAE8.090e-42100.00tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
D7FK87_ECTSI5.900e-3895.65Similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
D7FLX4_ECTSI1.220e-24100.00Alpha,alpha-trehalase n=1 Tax=Ectocarpus siliculos... [more]
A0A2V0P7W7_9CHLO2.360e-2468.12tRNA-binding domain-containing protein n=1 Tax=Rap... [more]
A0A7S1TKX4_9RHOD3.850e-2475.00Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A2V3IUX7_9FLOR4.370e-2469.57Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S0FZY8_9RHOD2.060e-2369.57Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A3M7KVY0_AUXPR4.660e-2362.32tRNA-binding domain-containing protein n=1 Tax=Aux... [more]
A0A5J4Z2W6_PORPP8.780e-2365.22Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
A0A7S0ZE83_9RHOD1.500e-2263.77Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10936contigEcto-sp8_S_contig10936:98..1167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score136.7
Seed ortholog evalue4e-30
Seed eggNOG ortholog2880.D7FK87
Preferred nameYARS
Model size207
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
Exons2
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
EC6.1.1.1
Cds size207
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143182.2526467-CDS-Ecto-sp8_S_contig10936:97..2491681143182.2526467-CDS-Ecto-sp8_S_contig10936:97..249Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10936 98..249 +
1681143182.2710297-CDS-Ecto-sp8_S_contig10936:1112..11671681143182.2710297-CDS-Ecto-sp8_S_contig10936:1112..1167Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10936 1113..1167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10936.1309.1prot_Ecto-sp8_S_contig10936.1309.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10936 98..1167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10936.1309.1

>prot_Ecto-sp8_S_contig10936.1309.1 ID=prot_Ecto-sp8_S_contig10936.1309.1|Name=mRNA_Ecto-sp8_S_contig10936.1309.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
RTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHS
SVDPLSPPEGAKIGELITF
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mRNA from alignment at Ecto-sp8_S_contig10936:98..1167+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10936.1309.1 ID=mRNA_Ecto-sp8_S_contig10936.1309.1|Name=mRNA_Ecto-sp8_S_contig10936.1309.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1070bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10936:98..1167+ (Ectocarpus species8 EcLAC_412)
AGGACGATCGTGTCAGGGCTTGTGGCGTATGTTCCGGAAGACGAGATGCG
GGGGAGGATGGTGGTGGGGCTTTGCAACCTCCCCTCCCGGGCCATGCGCG
GCGTGACGTCATCCGGGATGCTGCTGTGCGCCAGCAACGACGATCACTCG
AGGTGGGCCAGACTGCCCCCATGTACCGCATGGCACGTTGCTGTTGTGTG
TTGATGCTGTCGTTGTCTCTTCCACGTTCAAAACCCGTGTTTTACTGTTT
TCCGCCTTGAACCATCCGCAACATCCTTGCAAGTGCTCAAGGTACAGAAG
AGGGCGAAGTTCGGTGGTCACAGCGGTTAGGTTGACCCCACGGTGTATAT
AGTACGAGGTCTCCCGACCGAAAATGGCGGGGCCTCCAAACCTCTGAACA
CGTTTCCTCTCGGTGTGGTTCATTCAGTAGGGACCGGCGTTGTTGGTTCT
GTAGGAGGGAGGACGTGGCTGCAAGCTACCTCCATCTTGTCGGCACGTTA
CTCTTGTGCTTGTGGGGGGGGGGGTGCCGTATCTCATGCGGCTTGCTCAC
GGTAGCGTGTACTGTCATTCTTCGGTTGCACCACGCAGCAGTAGGTGATC
GATAGCGCGCCCCACCTTTTGGGGTTCCCTTGGCTCTCCTTCCTTCTTCG
TATGTTCTTCTCTGAGATATGTAGATTTTAAGAGCTCGATTGCCCCACGA
CCAAAGCTGGACGGCAGCACCGAACGATTCGCCGTCGGAACGTATCTCTC
TAGGCGGTAGATTGTACTCAAGAGTATGCATATTAGAGCGAGTTTTTCGA
AGTTTTCTTGTTTGTCGAGATAATGGAGGATGCAATCACAAATGGGTGTG
AGTTACCTTCTATGCAAAGTCGGCAATATAGTTTCTCCACCGTAAACAGA
GCACCAACTCGTTTGATTGTCCTGCGCTTTATTCTAACCGAGTTTGCGCC
ATTTCGGGTTCCCCTGGTGATCCCCCACCCCCACCCCCACCCCCCACCAC
CACCTACCCCTACAGCGTGGACCCCCTGTCGCCCCCAGAGGGAGCCAAGA
TCGGGGAGCTCATCACCTTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10936:98..1167+

>mRNA_Ecto-sp8_S_contig10936.1309.1 ID=mRNA_Ecto-sp8_S_contig10936.1309.1|Name=mRNA_Ecto-sp8_S_contig10936.1309.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10936:98..1167+ (Ectocarpus species8 EcLAC_412)
AGGACGATCGTGTCAGGGCTTGTGGCGTATGTTCCGGAAGACGAGATGCG
GGGGAGGATGGTGGTGGGGCTTTGCAACCTCCCCTCCCGGGCCATGCGCG
GCGTGACGTCATCCGGGATGCTGCTGTGCGCCAGCAACGACGATCACTCG
AGCGTGGACCCCCTGTCGCCCCCAGAGGGAGCCAAGATCGGGGAGCTCAT
CACCTTC
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