prot_Ecto-sp8_S_contig10759.1140.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10759.1140.1
Unique Nameprot_Ecto-sp8_S_contig10759.1140.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length376
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10759.1140.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 9.920e-107
Identity = 167/178 (93.82%), Postives = 171/178 (96.07%), Query Frame = 0 
Query:  138 DIRYLEDLLCSGPKGSRFNAVAAPSPKRKNRPRGGASGDNGGIETKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDVVDGAATAGRGRIPDGVPVVSSEWMSECLRRSEVVAADAYRLSPPPHRC 315
            DIR LEDLLCSGPKGSR NAVAAP+PKRK RPRGGA GDNGGI+TKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTL REFRDGGGQVSTHYTPGDTTHIVADASLAASWEK D YFSGWDDFEDVVDGAATAGRGR+PDGVPVVSSEWMSECLRRSEVVAADAYRL+PPPHRC
Sbjct:    2 DIRDLEDLLCSGPKGSRSNAVAAPNPKRKTRPRGGAGGDNGGIKTKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLPREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKFDLYFSGWDDFEDVVDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVAADAYRLTPPPHRC 179
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BLAST of mRNA_Ecto-sp8_S_contig10759.1140.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 1.460e-106
Identity = 167/178 (93.82%), Postives = 170/178 (95.51%), Query Frame = 0 
Query:  138 DIRYLEDLLCSGPKGSRFNAVAAPSPKRKNRPRGGASGDNGGIETKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDVVDGAATAGRGRIPDGVPVVSSEWMSECLRRSEVVAADAYRLSPPPHRC 315
            DIRYLEDLLCS PKGSR NAVAAPSPKRKNRPRGGASGDNGGIET KRPWKRAGAASGPFSGLSLCVV  GSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDVVDGAATAGRGR+PDGVPVVSSEWMSECLRRSEVV A+AYRL+PP H C
Sbjct:    2 DIRYLEDLLCSAPKGSRSNAVAAPSPKRKNRPRGGASGDNGGIETNKRPWKRAGAASGPFSGLSLCVVSQGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDVVDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVTAEAYRLTPPLHHC 179
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BLAST of mRNA_Ecto-sp8_S_contig10759.1140.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.660e-65
Identity = 143/282 (50.71%), Postives = 168/282 (59.57%), Query Frame = 0 
Query:   36 ASSSGGGIISRPDDRRGEPLGTAASGEQASVNPGKASGLRIDSGTCPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTDIRYLEDLLCSGPKGSRFNAV--AAPSPKRKNRPR-GGASGDNGGIETKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGW---DDFEDVVDGAATAGR-GRIPDGVPVVSSEWMSECLRRSEVVAADAYRLSP 310
            A SSGG  +SRP DR  E L TAA  +QAS +P KA G R+DSG  P G                                                  A+T +R+LED+L  GPKGSR N    A P+PKRK+ PR GG  G+    +T K+P +  GA SGPFSGLSLCVV LGSVTNNT+ T  R   DGGG VS  +TPGDTTHIVADASLAASWEKLD+YFSGW   DD +D V+G     + G +P+GVP+VS+EW+SECLRRS VVA DAYRL P
Sbjct:  110 AGSSGGRAVSRPRDRLVELLSTAACVKQASASPDKAFGWRVDSGDGPEG-EQEGASGVASTCGGRRDGHDRGPTPPPAAASVSTESQSVLASAGAKGGGAKTGVRFLEDILRLGPKGSRSNDAGGALPNPKRKSHPRRGGCKGEASRTQTHKKPRQGTGAVSGPFSGLSLCVVHLGSVTNNTIKTFKRGVCDGGGHVSMRFTPGDTTHIVADASLAASWEKLDNYFSGWGGVDDLDDAVNGGRVGLKSGMMPEGVPIVSNEWLSECLRRSVVVATDAYRLIP 390
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10759.1140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQ91_9PHAE9.920e-10793.82DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F7_ECTSI1.460e-10693.82DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JHQ3_9PHAE2.660e-6550.71DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 181..311
e-value: 6.9E-10
score: 40.8
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 196..314
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 192..308
score: 16.595

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10759contigEcto-sp8_S_contig10759:3578..4705 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10759.1140.1mRNA_Ecto-sp8_S_contig10759.1140.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10759 3578..4706 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10759.1140.1 ID=prot_Ecto-sp8_S_contig10759.1140.1|Name=mRNA_Ecto-sp8_S_contig10759.1140.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=376bp
TSNGLLCQGDATAVLIPMSRSGDCGGAALKAHPSPASSSGGGIISRPDDR
RGEPLGTAASGEQASVNPGKASGLRIDSGTCPAGGDDDASAAAVSATGTG
GGRRDGGNQAATAAAAVATVGRLPPAAVRAGGGGARTDIRYLEDLLCSGP
KGSRFNAVAAPSPKRKNRPRGGASGDNGGIETKKRPWKRAGAASGPFSGL
SLCVVRLGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAAS
WEKLDDYFSGWDDFEDVVDGAATAGRGRIPDGVPVVSSEWMSECLRRSEV
VAADAYRLSPPPHRCAAPAAVAPKQQQRSSTATKETSAVAEGCSSSASPA
ATGKKRVLTSGGEETTGGLVATRNQR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom