mRNA_Ecto-sp8_S_contig10759.1140.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10759.1140.1
Unique NamemRNA_Ecto-sp8_S_contig10759.1140.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10759.1140.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 9.920e-107
Identity = 167/178 (93.82%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:  412 DIRYLEDLLCSGPKGSRFNAVAAPSPKRKNRPRGGASGDNGGIETKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDVVDGAATAGRGRIPDGVPVVSSEWMSECLRRSEVVAADAYRLSPPPHRC 945
            DIR LEDLLCSGPKGSR NAVAAP+PKRK RPRGGA GDNGGI+TKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTL REFRDGGGQVSTHYTPGDTTHIVADASLAASWEK D YFSGWDDFEDVVDGAATAGRGR+PDGVPVVSSEWMSECLRRSEVVAADAYRL+PPPHRC
Sbjct:    2 DIRDLEDLLCSGPKGSRSNAVAAPNPKRKTRPRGGAGGDNGGIKTKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLPREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKFDLYFSGWDDFEDVVDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVAADAYRLTPPPHRC 179
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BLAST of mRNA_Ecto-sp8_S_contig10759.1140.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 1.460e-106
Identity = 167/178 (93.82%), Postives = 170/178 (95.51%), Query Frame = 1 
Query:  412 DIRYLEDLLCSGPKGSRFNAVAAPSPKRKNRPRGGASGDNGGIETKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDVVDGAATAGRGRIPDGVPVVSSEWMSECLRRSEVVAADAYRLSPPPHRC 945
            DIRYLEDLLCS PKGSR NAVAAPSPKRKNRPRGGASGDNGGIET KRPWKRAGAASGPFSGLSLCVV  GSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDVVDGAATAGRGR+PDGVPVVSSEWMSECLRRSEVV A+AYRL+PP H C
Sbjct:    2 DIRYLEDLLCSAPKGSRSNAVAAPSPKRKNRPRGGASGDNGGIETNKRPWKRAGAASGPFSGLSLCVVSQGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDVVDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVTAEAYRLTPPLHHC 179
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BLAST of mRNA_Ecto-sp8_S_contig10759.1140.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.660e-65
Identity = 143/282 (50.71%), Postives = 168/282 (59.57%), Query Frame = 1 
Query:  106 ASSSGGGIISRPDDRRGEPLGTAASGEQASVNPGKASGLRIDSGTCPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTDIRYLEDLLCSGPKGSRFNAV--AAPSPKRKNRPR-GGASGDNGGIETKKRPWKRAGAASGPFSGLSLCVVRLGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGW---DDFEDVVDGAATAGR-GRIPDGVPVVSSEWMSECLRRSEVVAADAYRLSP 930
            A SSGG  +SRP DR  E L TAA  +QAS +P KA G R+DSG  P G                                                  A+T +R+LED+L  GPKGSR N    A P+PKRK+ PR GG  G+    +T K+P +  GA SGPFSGLSLCVV LGSVTNNT+ T  R   DGGG VS  +TPGDTTHIVADASLAASWEKLD+YFSGW   DD +D V+G     + G +P+GVP+VS+EW+SECLRRS VVA DAYRL P
Sbjct:  110 AGSSGGRAVSRPRDRLVELLSTAACVKQASASPDKAFGWRVDSGDGPEG-EQEGASGVASTCGGRRDGHDRGPTPPPAAASVSTESQSVLASAGAKGGGAKTGVRFLEDILRLGPKGSRSNDAGGALPNPKRKSHPRRGGCKGEASRTQTHKKPRQGTGAVSGPFSGLSLCVVHLGSVTNNTIKTFKRGVCDGGGHVSMRFTPGDTTHIVADASLAASWEKLDNYFSGWGGVDDLDDAVNGGRVGLKSGMMPEGVPIVSNEWLSECLRRSVVVATDAYRLIP 390
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10759.1140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQ91_9PHAE9.920e-10793.82DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F7_ECTSI1.460e-10693.82DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JHQ3_9PHAE2.660e-6550.71DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10759contigEcto-sp8_S_contig10759:3578..4706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score343.6
Seed ortholog evalue1.2e-91
Seed eggNOG ortholog2880.D7G2F7
Preferred namePOLB
Model size1130
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
Exons1
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.7,5.4.2.11
Cds size1128
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143170.355887-CDS-Ecto-sp8_S_contig10759:3577..47051681143170.355887-CDS-Ecto-sp8_S_contig10759:3577..4705Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10759 3578..4705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10759.1140.1prot_Ecto-sp8_S_contig10759.1140.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10759 3578..4705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10759.1140.1

>prot_Ecto-sp8_S_contig10759.1140.1 ID=prot_Ecto-sp8_S_contig10759.1140.1|Name=mRNA_Ecto-sp8_S_contig10759.1140.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=376bp
TSNGLLCQGDATAVLIPMSRSGDCGGAALKAHPSPASSSGGGIISRPDDR
RGEPLGTAASGEQASVNPGKASGLRIDSGTCPAGGDDDASAAAVSATGTG
GGRRDGGNQAATAAAAVATVGRLPPAAVRAGGGGARTDIRYLEDLLCSGP
KGSRFNAVAAPSPKRKNRPRGGASGDNGGIETKKRPWKRAGAASGPFSGL
SLCVVRLGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAAS
WEKLDDYFSGWDDFEDVVDGAATAGRGRIPDGVPVVSSEWMSECLRRSEV
VAADAYRLSPPPHRCAAPAAVAPKQQQRSSTATKETSAVAEGCSSSASPA
ATGKKRVLTSGGEETTGGLVATRNQR
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mRNA from alignment at Ecto-sp8_S_contig10759:3578..4706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10759.1140.1 ID=mRNA_Ecto-sp8_S_contig10759.1140.1|Name=mRNA_Ecto-sp8_S_contig10759.1140.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10759:3578..4706+ (Ectocarpus species8 EcLAC_412)
ACCAGCAACGGATTATTATGTCAAGGCGATGCCACAGCAGTCCTTATTCC
CATGTCGCGCTCGGGGGACTGCGGCGGAGCAGCCCTCAAGGCGCATCCCT
CCCCCGCTTCTAGCAGCGGCGGCGGGATCATCTCACGGCCCGATGACAGA
CGAGGAGAGCCTCTTGGCACCGCTGCGAGTGGCGAACAAGCATCCGTCAA
CCCTGGCAAGGCTTCGGGCTTGAGAATCGATAGCGGCACCTGTCCGGCAG
GAGGGGATGACGATGCTTCAGCCGCTGCTGTTAGCGCTACCGGCACCGGC
GGGGGCCGTCGTGATGGCGGCAACCAAGCAGCAACAGCAGCAGCGGCGGT
GGCGACGGTAGGACGACTACCTCCAGCTGCCGTGCGCGCTGGCGGAGGGG
GTGCAAGAACGGACATTCGTTACCTTGAAGACCTCCTGTGTTCGGGACCG
AAAGGATCGCGTTTCAACGCGGTGGCGGCGCCGAGTCCGAAACGGAAGAA
CCGGCCGCGCGGCGGGGCTAGCGGCGACAACGGGGGCATCGAAACCAAGA
AGAGGCCGTGGAAGAGAGCGGGCGCGGCGTCCGGGCCGTTCTCTGGGTTG
TCTCTCTGCGTGGTTCGCCTGGGCTCGGTGACGAACAACACCGTAGGGAC
ACTCACGCGGGAGTTTCGCGACGGCGGAGGGCAGGTATCGACTCACTACA
CGCCTGGGGACACGACCCATATCGTGGCCGATGCCTCGCTTGCCGCTTCC
TGGGAGAAGCTCGACGACTACTTCAGCGGGTGGGACGACTTCGAGGACGT
TGTTGATGGCGCGGCGACGGCAGGCAGGGGAAGGATACCTGACGGGGTGC
CTGTCGTGAGCAGCGAGTGGATGAGCGAGTGCTTGAGGCGCTCCGAGGTG
GTGGCCGCTGACGCGTACCGGTTGTCCCCGCCGCCGCACCGCTGTGCGGC
ACCTGCAGCAGTCGCACCGAAGCAGCAGCAGAGGTCCAGCACAGCTACCA
AGGAAACAAGCGCTGTGGCTGAGGGTTGCTCTTCTTCCGCTTCGCCTGCT
GCAACAGGCAAGAAGAGGGTGTTGACATCGGGGGGCGAGGAGACCACCGG
TGGTCTCGTGGCGACGAGAAATCAGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10759:3578..4706+

>mRNA_Ecto-sp8_S_contig10759.1140.1 ID=mRNA_Ecto-sp8_S_contig10759.1140.1|Name=mRNA_Ecto-sp8_S_contig10759.1140.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10759:3578..4706+ (Ectocarpus species8 EcLAC_412)
ACCAGCAACGGATTATTATGTCAAGGCGATGCCACAGCAGTCCTTATTCC
CATGTCGCGCTCGGGGGACTGCGGCGGAGCAGCCCTCAAGGCGCATCCCT
CCCCCGCTTCTAGCAGCGGCGGCGGGATCATCTCACGGCCCGATGACAGA
CGAGGAGAGCCTCTTGGCACCGCTGCGAGTGGCGAACAAGCATCCGTCAA
CCCTGGCAAGGCTTCGGGCTTGAGAATCGATAGCGGCACCTGTCCGGCAG
GAGGGGATGACGATGCTTCAGCCGCTGCTGTTAGCGCTACCGGCACCGGC
GGGGGCCGTCGTGATGGCGGCAACCAAGCAGCAACAGCAGCAGCGGCGGT
GGCGACGGTAGGACGACTACCTCCAGCTGCCGTGCGCGCTGGCGGAGGGG
GTGCAAGAACGGACATTCGTTACCTTGAAGACCTCCTGTGTTCGGGACCG
AAAGGATCGCGTTTCAACGCGGTGGCGGCGCCGAGTCCGAAACGGAAGAA
CCGGCCGCGCGGCGGGGCTAGCGGCGACAACGGGGGCATCGAAACCAAGA
AGAGGCCGTGGAAGAGAGCGGGCGCGGCGTCCGGGCCGTTCTCTGGGTTG
TCTCTCTGCGTGGTTCGCCTGGGCTCGGTGACGAACAACACCGTAGGGAC
ACTCACGCGGGAGTTTCGCGACGGCGGAGGGCAGGTATCGACTCACTACA
CGCCTGGGGACACGACCCATATCGTGGCCGATGCCTCGCTTGCCGCTTCC
TGGGAGAAGCTCGACGACTACTTCAGCGGGTGGGACGACTTCGAGGACGT
TGTTGATGGCGCGGCGACGGCAGGCAGGGGAAGGATACCTGACGGGGTGC
CTGTCGTGAGCAGCGAGTGGATGAGCGAGTGCTTGAGGCGCTCCGAGGTG
GTGGCCGCTGACGCGTACCGGTTGTCCCCGCCGCCGCACCGCTGTGCGGC
ACCTGCAGCAGTCGCACCGAAGCAGCAGCAGAGGTCCAGCACAGCTACCA
AGGAAACAAGCGCTGTGGCTGAGGGTTGCTCTTCTTCCGCTTCGCCTGCT
GCAACAGGCAAGAAGAGGGTGTTGACATCGGGGGGCGAGGAGACCACCGG
TGGTCTCGTGGCGACGAGAAATCAGCGG
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