prot_Ecto-sp8_S_contig106530.1016.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig106530.1016.1
Unique Nameprot_Ecto-sp8_S_contig106530.1016.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length105
Homology
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI000C764D4A (uncharacterized protein LOC111712967 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C764D4A)

HSP 1 Score: 101 bits (251), Expect = 9.640e-23
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 0
Query:    9 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEEAMKQAKKETQAKK 99
            GQPK+PMS YF+W+NE GR  +K +NP  S+TEV KK GE WR +D   KK +E   + AK+K++ + KEWLE GG EA+KQAKKE +A K
Sbjct:  528 GQPKKPMSAYFMWLNEEGREKIKTENPGISVTEVGKKSGEIWREMDGEEKKIWEGKAKAAKEKYDDEYKEWLETGGSEAIKQAKKEGKAAK 618          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI0018852570 (LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018852570)

HSP 1 Score: 80.5 bits (197), Expect = 1.820e-15
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    9 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEEAMKQAK 92
            G PKRPMS YF+W+NE  R  +K+++P  S+TEVSKK GE WR L D S+  +EK  QEAK ++E +MKEW  +GG  A K  K
Sbjct:  546 GAPKRPMSAYFIWLNE-HREQIKEEHPGISVTEVSKKAGEMWRELKDKSE--WEKKNQEAKARYEEEMKEWRASGGAVAGKTPK 626          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A6A4W7Q7_AMPAM (FACT complex subunit SSRP1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W7Q7_AMPAM)

HSP 1 Score: 79.0 bits (193), Expect = 6.310e-15
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query:    9 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENG 83
            G PKRPMS YFLW+NE  R  +K++NP  SITE+SKK GE WR L D S+  +EK  QEA+ ++E +MKEW  +G
Sbjct:  526 GAPKRPMSAYFLWLNE-HREQIKEENPGISITEISKKAGEMWRELKDKSE--WEKKNQEARARYEEEMKEWRASG 597          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A226E258_FOLCA (FACT complex subunit SSRP1 n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226E258_FOLCA)

HSP 1 Score: 72.8 bits (177), Expect = 9.190e-13
Identity = 35/69 (50.72%), Postives = 53/69 (76.81%), Query Frame = 0
Query:   11 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEW 79
            PKRP+S+YFLWMN   R  VKKKNP  S++++SKK GE WR +D   KK++++  Q+AK++++ +MKE+
Sbjct:  560 PKRPLSSYFLWMN-ANRESVKKKNPGLSVSDLSKKFGEIWRTVDADDKKEWDEKAQKAKERYDEEMKEY 627          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A1D2MYP6_ORCCI (Protein NATD1 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MYP6_ORCCI)

HSP 1 Score: 71.6 bits (174), Expect = 2.370e-12
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   11 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGG 84
            PKRPMS YF+W+N   R  +KKK P  S+TE +KK GEEW+ ++D  K K+E   +EAK+ +E  MKE+ +NGG
Sbjct:  561 PKRPMSGYFIWLNS-NRESLKKKFPGLSLTEFTKKAGEEWKKMED--KTKWEAKAKEAKEDYEEQMKEYKKNGG 631          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: V4AJ42_LOTGI (FACT complex subunit SSRP1 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AJ42_LOTGI)

HSP 1 Score: 71.2 bits (173), Expect = 3.200e-12
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 0
Query:    8 EGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEW 79
            +GQPKRP S+YFLW+NE  R  +K++NP  SIT++S+K GE W+ +DD  K K++K+ +EAK  +   M+EW
Sbjct:  568 KGQPKRPQSSYFLWLNE-HREQIKEENPGISITDISRKAGEMWKKVDD--KTKWDKLAEEAKKDYVKAMEEW 636          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A4W5MFA4_9TELE (FACT complex subunit SSRP1 n=14 Tax=Salmonidae TaxID=8015 RepID=A0A4W5MFA4_9TELE)

HSP 1 Score: 70.9 bits (172), Expect = 4.350e-12
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0
Query:   11 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGG 84
            PKRPMS+Y LW+N   R  +K +NP  SITE+SKK GE W+ +    K+ +++  +EAK  +E  MKE+ ENGG
Sbjct:  548 PKRPMSSYMLWLNS-SRERIKSENPGISITEISKKAGEMWKQIGKDDKEGWDRKAEEAKKNYEKAMKEYRENGG 620          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A8C7FBS1_ONCKI (FACT complex subunit SSRP1 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7FBS1_ONCKI)

HSP 1 Score: 70.9 bits (172), Expect = 4.490e-12
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0
Query:   11 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGG 84
            PKRPMS+Y LW+N   R  +K +NP  SITE+SKK GE W+ +    K+ +++  +EAK  +E  MKE+ ENGG
Sbjct: 1051 PKRPMSSYMLWLNS-SREHIKSENPGISITEISKKAGEMWKQIGKDDKEGWDRKAEEAKKNYEKAMKEYRENGG 1123          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A6J8EV31_MYTCO (SSRP1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EV31_MYTCO)

HSP 1 Score: 68.9 bits (167), Expect = 1.010e-11
Identity = 31/75 (41.33%), Postives = 58/75 (77.33%), Query Frame = 0
Query:    8 EGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLEN 82
            + +PKRPM++YF+W +   R  +K+KNP+AS+T++SKK GE WR++D + + ++E+   +AK+++ + M+E+L+N
Sbjct:  186 QNKPKRPMTSYFMWFS-TNRNDIKEKNPDASLTDISKKGGELWRSMDASERGEWEQKFLKAKEEYNIAMEEYLKN 259          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI0010FCAF06 (FACT complex subunit SSRP1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI0010FCAF06)

HSP 1 Score: 69.3 bits (168), Expect = 1.520e-11
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   11 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMK 77
            PKRPM+ Y LWMN++ RA +K+ NP  S+TE+SKK GE W+ + D  K K+++  QEAK K+E DMK
Sbjct:  574 PKRPMTAYMLWMNDI-RAKIKEDNPGISVTELSKKAGEMWKTVGD--KTKWQEKAQEAKKKYEEDMK 637          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C764D4A9.640e-2356.04uncharacterized protein LOC111712967 n=1 Tax=Euryt... [more]
UPI00188525701.820e-1553.57LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-li... [more]
A0A6A4W7Q7_AMPAM6.310e-1556.00FACT complex subunit SSRP1 n=2 Tax=Amphibalanus am... [more]
A0A226E258_FOLCA9.190e-1350.72FACT complex subunit SSRP1 n=2 Tax=Folsomia candid... [more]
A0A1D2MYP6_ORCCI2.370e-1251.35Protein NATD1 n=1 Tax=Orchesella cincta TaxID=4870... [more]
V4AJ42_LOTGI3.200e-1250.00FACT complex subunit SSRP1 n=1 Tax=Lottia gigantea... [more]
A0A4W5MFA4_9TELE4.350e-1248.65FACT complex subunit SSRP1 n=14 Tax=Salmonidae Tax... [more]
A0A8C7FBS1_ONCKI4.490e-1248.65FACT complex subunit SSRP1 n=1 Tax=Oncorhynchus ki... [more]
A0A6J8EV31_MYTCO1.010e-1141.33SSRP1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]
UPI0010FCAF061.520e-1153.73FACT complex subunit SSRP1-like n=2 Tax=Acropora T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 45..64
score: 37.22
coord: 27..45
score: 40.35
coord: 64..84
score: 24.16
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 4..102
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 4..102
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 10..81
e-value: 1.3E-19
score: 81.1
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 11..79
e-value: 1.2E-21
score: 76.9
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 11..80
score: 18.111
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 6..104
e-value: 5.2E-23
score: 83.5
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 3..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106530contigEcto-sp8_S_contig106530:62..376 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106530.1016.1mRNA_Ecto-sp8_S_contig106530.1016.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig106530 62..376 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig106530.1016.1 ID=prot_Ecto-sp8_S_contig106530.1016.1|Name=mRNA_Ecto-sp8_S_contig106530.1016.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp
MVKAVRAEGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEW
RALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEEAMKQAKKETQAKKD
KKAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf