mRNA_Ecto-sp8_S_contig106530.1016.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106530.1016.1
Unique NamemRNA_Ecto-sp8_S_contig106530.1016.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI000C764D4A (uncharacterized protein LOC111712967 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C764D4A)

HSP 1 Score: 101 bits (251), Expect = 9.640e-23
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   25 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEEAMKQAKKETQAKK 297
            GQPK+PMS YF+W+NE GR  +K +NP  S+TEV KK GE WR +D   KK +E   + AK+K++ + KEWLE GG EA+KQAKKE +A K
Sbjct:  528 GQPKKPMSAYFMWLNEEGREKIKTENPGISVTEVGKKSGEIWREMDGEEKKIWEGKAKAAKEKYDDEYKEWLETGGSEAIKQAKKEGKAAK 618          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI0018852570 (LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018852570)

HSP 1 Score: 80.5 bits (197), Expect = 1.820e-15
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   25 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEEAMKQAK 276
            G PKRPMS YF+W+NE  R  +K+++P  S+TEVSKK GE WR L D S+  +EK  QEAK ++E +MKEW  +GG  A K  K
Sbjct:  546 GAPKRPMSAYFIWLNE-HREQIKEEHPGISVTEVSKKAGEMWRELKDKSE--WEKKNQEAKARYEEEMKEWRASGGAVAGKTPK 626          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A6A4W7Q7_AMPAM (FACT complex subunit SSRP1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W7Q7_AMPAM)

HSP 1 Score: 79.0 bits (193), Expect = 6.310e-15
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   25 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENG 249
            G PKRPMS YFLW+NE  R  +K++NP  SITE+SKK GE WR L D S+  +EK  QEA+ ++E +MKEW  +G
Sbjct:  526 GAPKRPMSAYFLWLNE-HREQIKEENPGISITEISKKAGEMWRELKDKSE--WEKKNQEARARYEEEMKEWRASG 597          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A226E258_FOLCA (FACT complex subunit SSRP1 n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226E258_FOLCA)

HSP 1 Score: 72.8 bits (177), Expect = 9.190e-13
Identity = 35/69 (50.72%), Postives = 53/69 (76.81%), Query Frame = 1
Query:   31 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEW 237
            PKRP+S+YFLWMN   R  VKKKNP  S++++SKK GE WR +D   KK++++  Q+AK++++ +MKE+
Sbjct:  560 PKRPLSSYFLWMN-ANRESVKKKNPGLSVSDLSKKFGEIWRTVDADDKKEWDEKAQKAKERYDEEMKEY 627          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A1D2MYP6_ORCCI (Protein NATD1 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MYP6_ORCCI)

HSP 1 Score: 71.6 bits (174), Expect = 2.370e-12
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   31 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGG 252
            PKRPMS YF+W+N   R  +KKK P  S+TE +KK GEEW+ ++D  K K+E   +EAK+ +E  MKE+ +NGG
Sbjct:  561 PKRPMSGYFIWLNS-NRESLKKKFPGLSLTEFTKKAGEEWKKMED--KTKWEAKAKEAKEDYEEQMKEYKKNGG 631          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: V4AJ42_LOTGI (FACT complex subunit SSRP1 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AJ42_LOTGI)

HSP 1 Score: 71.2 bits (173), Expect = 3.200e-12
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   22 EGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEW 237
            +GQPKRP S+YFLW+NE  R  +K++NP  SIT++S+K GE W+ +DD  K K++K+ +EAK  +   M+EW
Sbjct:  568 KGQPKRPQSSYFLWLNE-HREQIKEENPGISITDISRKAGEMWKKVDD--KTKWDKLAEEAKKDYVKAMEEW 636          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A6J8EV31_MYTCO (SSRP1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EV31_MYTCO)

HSP 1 Score: 68.9 bits (167), Expect = 1.010e-11
Identity = 31/75 (41.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:   22 EGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLEN 246
            + +PKRPM++YF+W +   R  +K+KNP+AS+T++SKK GE WR++D + + ++E+   +AK+++ + M+E+L+N
Sbjct:  186 QNKPKRPMTSYFMWFS-TNRNDIKEKNPDASLTDISKKGGELWRSMDASERGEWEQKFLKAKEEYNIAMEEYLKN 259          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI0010FCAF06 (FACT complex subunit SSRP1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI0010FCAF06)

HSP 1 Score: 69.3 bits (168), Expect = 1.520e-11
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   31 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMK 231
            PKRPM+ Y LWMN++ RA +K+ NP  S+TE+SKK GE W+ + D  K K+++  QEAK K+E DMK
Sbjct:  574 PKRPMTAYMLWMNDI-RAKIKEDNPGISVTELSKKAGEMWKTVGD--KTKWQEKAQEAKKKYEEDMK 637          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A2B4SC81_STYPI (FACT complex subunit SSRP1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SC81_STYPI)

HSP 1 Score: 68.9 bits (167), Expect = 2.090e-11
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 KAVRAEGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEE 258
            KA +    PKRPMS Y LW+NE+ R  +K++NP  S+TE+SK  GE+W+ +DD  K K+++M +EAK K++  MK + E    E
Sbjct:  663 KAKKDADAPKRPMSAYMLWLNEI-REQIKQENPGISVTELSKVAGEKWKKIDD--KTKWQEMAKEAKKKYDEAMKVYKEKKANE 743          
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: T1JSI6_TETUR (FACT complex subunit SSRP1 n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1JSI6_TETUR)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-11
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   28 QPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGG 252
            +PK+PM+ YFLW+NE  R  +KK++P  S+TE++KK  E WR  +   K K+EK  QEAK K+EVDM  +  +GG
Sbjct:  559 RPKKPMTAYFLWLNE-NRERLKKEHPGLSLTELTKKAAEIWRT-NVGDKSKWEKQSQEAKKKYEVDMAAYKASGG 631          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C764D4A9.640e-2356.04uncharacterized protein LOC111712967 n=1 Tax=Euryt... [more]
UPI00188525701.820e-1553.57LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-li... [more]
A0A6A4W7Q7_AMPAM6.310e-1556.00FACT complex subunit SSRP1 n=2 Tax=Amphibalanus am... [more]
A0A226E258_FOLCA9.190e-1350.72FACT complex subunit SSRP1 n=2 Tax=Folsomia candid... [more]
A0A1D2MYP6_ORCCI2.370e-1251.35Protein NATD1 n=1 Tax=Orchesella cincta TaxID=4870... [more]
V4AJ42_LOTGI3.200e-1250.00FACT complex subunit SSRP1 n=1 Tax=Lottia gigantea... [more]
A0A6J8EV31_MYTCO1.010e-1141.33SSRP1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]
UPI0010FCAF061.520e-1153.73FACT complex subunit SSRP1-like n=2 Tax=Acropora T... [more]
A0A2B4SC81_STYPI2.090e-1145.24FACT complex subunit SSRP1 n=2 Tax=Stylophora pist... [more]
T1JSI6_TETUR3.850e-1149.33FACT complex subunit SSRP1 n=1 Tax=Tetranychus urt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106530contigEcto-sp8_S_contig106530:62..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score71.2
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog51511.ENSCSAVP00000020027
Preferred nameSSRP1
Model size315
KEGG koko:K09272
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000981,GO:0001672,GO:0001932,GO:0001933,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007292,GO:0008023,GO:0008064,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009888,GO:0009889,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010563,GO:0010605,GO:0010638,GO:0010646,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0030154,GO:0030707,GO:0030832,GO:0030833,GO:0030838,GO:0030855,GO:0031323,GO:0031324,GO:0031326,GO:0031334,GO:0031399,GO:0031400,GO:0031490,GO:0031491,GO:0031492,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032774,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033044,GO:0034641,GO:0034645,GO:0034654,GO:0035101,GO:0042325,GO:0042326,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043621,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044877,GO:0045936,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051098,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051493,GO:0051495,GO:0051704,GO:0060255,GO:0060429,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0090304,GO:0097159,GO:0097659,GO:0110053,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902275,GO:1902531,GO:1902903,GO:1902905,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.DNA replication
EggNOG OGs38CT0@33154,3B9AQ@33208,3CXEP@33213,488PX@7711,COG5165@1,KOG0526@2759
Cds size315
COG Functional cat.K
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.9845898-CDS-Ecto-sp8_S_contig106530:61..3761681143161.9845898-CDS-Ecto-sp8_S_contig106530:61..376Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106530 62..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106530.1016.1prot_Ecto-sp8_S_contig106530.1016.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106530 62..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106530.1016.1

>prot_Ecto-sp8_S_contig106530.1016.1 ID=prot_Ecto-sp8_S_contig106530.1016.1|Name=mRNA_Ecto-sp8_S_contig106530.1016.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp
MVKAVRAEGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEW
RALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEEAMKQAKKETQAKKD
KKAS*
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mRNA from alignment at Ecto-sp8_S_contig106530:62..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106530.1016.1 ID=mRNA_Ecto-sp8_S_contig106530.1016.1|Name=mRNA_Ecto-sp8_S_contig106530.1016.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106530:62..376+ (Ectocarpus species8 EcLAC_412)
ATGGTCAAAGCAGTCAGAGCCGAGGGACAGCCTAAGCGCCCCATGTCCAC TTACTTCTTGTGGATGAACGAGGTCGGCAGGGCCGGTGTCAAGAAGAAGA ACCCTGAGGCTTCTATCACCGAGGTCTCCAAGAAGTGCGGAGAGGAATGG AGAGCTCTCGACGACGCAAGCAAGAAGAAGTACGAGAAGATGCAACAGGA GGCCAAGGATAAGTTCGAGGTCGACATGAAGGAGTGGTTGGAGAACGGAG GAGAGGAGGCCATGAAGCAAGCCAAGAAGGAGACTCAAGCCAAGAAAGAC AAGAAGGCTTCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106530:62..376+

>mRNA_Ecto-sp8_S_contig106530.1016.1 ID=mRNA_Ecto-sp8_S_contig106530.1016.1|Name=mRNA_Ecto-sp8_S_contig106530.1016.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106530:62..376+ (Ectocarpus species8 EcLAC_412)
ATGGTCAAAGCAGTCAGAGCCGAGGGACAGCCTAAGCGCCCCATGTCCAC
TTACTTCTTGTGGATGAACGAGGTCGGCAGGGCCGGTGTCAAGAAGAAGA
ACCCTGAGGCTTCTATCACCGAGGTCTCCAAGAAGTGCGGAGAGGAATGG
AGAGCTCTCGACGACGCAAGCAAGAAGAAGTACGAGAAGATGCAACAGGA
GGCCAAGGATAAGTTCGAGGTCGACATGAAGGAGTGGTTGGAGAACGGAG
GAGAGGAGGCCATGAAGCAAGCCAAGAAGGAGACTCAAGCCAAGAAAGAC
AAGAAGGCTTCTTGA
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