mRNA_Ecto-sp8_S_contig106530.1016.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI000C764D4A (uncharacterized protein LOC111712967 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C764D4A) HSP 1 Score: 101 bits (251), Expect = 9.640e-23 Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 25 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEEAMKQAKKETQAKK 297
GQPK+PMS YF+W+NE GR +K +NP S+TEV KK GE WR +D KK +E + AK+K++ + KEWLE GG EA+KQAKKE +A K
Sbjct: 528 GQPKKPMSAYFMWLNEEGREKIKTENPGISVTEVGKKSGEIWREMDGEEKKIWEGKAKAAKEKYDDEYKEWLETGGSEAIKQAKKEGKAAK 618
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI0018852570 (LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018852570) HSP 1 Score: 80.5 bits (197), Expect = 1.820e-15 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 25 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEEAMKQAK 276
G PKRPMS YF+W+NE R +K+++P S+TEVSKK GE WR L D S+ +EK QEAK ++E +MKEW +GG A K K
Sbjct: 546 GAPKRPMSAYFIWLNE-HREQIKEEHPGISVTEVSKKAGEMWRELKDKSE--WEKKNQEAKARYEEEMKEWRASGGAVAGKTPK 626
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A6A4W7Q7_AMPAM (FACT complex subunit SSRP1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W7Q7_AMPAM) HSP 1 Score: 79.0 bits (193), Expect = 6.310e-15 Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 25 GQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENG 249
G PKRPMS YFLW+NE R +K++NP SITE+SKK GE WR L D S+ +EK QEA+ ++E +MKEW +G
Sbjct: 526 GAPKRPMSAYFLWLNE-HREQIKEENPGISITEISKKAGEMWRELKDKSE--WEKKNQEARARYEEEMKEWRASG 597
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A226E258_FOLCA (FACT complex subunit SSRP1 n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226E258_FOLCA) HSP 1 Score: 72.8 bits (177), Expect = 9.190e-13 Identity = 35/69 (50.72%), Postives = 53/69 (76.81%), Query Frame = 1
Query: 31 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEW 237
PKRP+S+YFLWMN R VKKKNP S++++SKK GE WR +D KK++++ Q+AK++++ +MKE+
Sbjct: 560 PKRPLSSYFLWMN-ANRESVKKKNPGLSVSDLSKKFGEIWRTVDADDKKEWDEKAQKAKERYDEEMKEY 627
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A1D2MYP6_ORCCI (Protein NATD1 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MYP6_ORCCI) HSP 1 Score: 71.6 bits (174), Expect = 2.370e-12 Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 31 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGG 252
PKRPMS YF+W+N R +KKK P S+TE +KK GEEW+ ++D K K+E +EAK+ +E MKE+ +NGG
Sbjct: 561 PKRPMSGYFIWLNS-NRESLKKKFPGLSLTEFTKKAGEEWKKMED--KTKWEAKAKEAKEDYEEQMKEYKKNGG 631
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: V4AJ42_LOTGI (FACT complex subunit SSRP1 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AJ42_LOTGI) HSP 1 Score: 71.2 bits (173), Expect = 3.200e-12 Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 22 EGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEW 237
+GQPKRP S+YFLW+NE R +K++NP SIT++S+K GE W+ +DD K K++K+ +EAK + M+EW
Sbjct: 568 KGQPKRPQSSYFLWLNE-HREQIKEENPGISITDISRKAGEMWKKVDD--KTKWDKLAEEAKKDYVKAMEEW 636
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A6J8EV31_MYTCO (SSRP1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EV31_MYTCO) HSP 1 Score: 68.9 bits (167), Expect = 1.010e-11 Identity = 31/75 (41.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 22 EGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLEN 246
+ +PKRPM++YF+W + R +K+KNP+AS+T++SKK GE WR++D + + ++E+ +AK+++ + M+E+L+N
Sbjct: 186 QNKPKRPMTSYFMWFS-TNRNDIKEKNPDASLTDISKKGGELWRSMDASERGEWEQKFLKAKEEYNIAMEEYLKN 259
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: UPI0010FCAF06 (FACT complex subunit SSRP1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI0010FCAF06) HSP 1 Score: 69.3 bits (168), Expect = 1.520e-11 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 31 PKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMK 231
PKRPM+ Y LWMN++ RA +K+ NP S+TE+SKK GE W+ + D K K+++ QEAK K+E DMK
Sbjct: 574 PKRPMTAYMLWMNDI-RAKIKEDNPGISVTELSKKAGEMWKTVGD--KTKWQEKAQEAKKKYEEDMK 637
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: A0A2B4SC81_STYPI (FACT complex subunit SSRP1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SC81_STYPI) HSP 1 Score: 68.9 bits (167), Expect = 2.090e-11 Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 7 KAVRAEGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGGEE 258
KA + PKRPMS Y LW+NE+ R +K++NP S+TE+SK GE+W+ +DD K K+++M +EAK K++ MK + E E
Sbjct: 663 KAKKDADAPKRPMSAYMLWLNEI-REQIKQENPGISVTELSKVAGEKWKKIDD--KTKWQEMAKEAKKKYDEAMKVYKEKKANE 743
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Match: T1JSI6_TETUR (FACT complex subunit SSRP1 n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1JSI6_TETUR) HSP 1 Score: 68.2 bits (165), Expect = 3.850e-11 Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 28 QPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWRALDDASKKKYEKMQQEAKDKFEVDMKEWLENGG 252
+PK+PM+ YFLW+NE R +KK++P S+TE++KK E WR + K K+EK QEAK K+EVDM + +GG
Sbjct: 559 RPKKPMTAYFLWLNE-NRERLKKEHPGLSLTELTKKAAEIWRT-NVGDKSKWEKQSQEAKKKYEVDMAAYKASGG 631 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106530.1016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig106530.1016.1 >prot_Ecto-sp8_S_contig106530.1016.1 ID=prot_Ecto-sp8_S_contig106530.1016.1|Name=mRNA_Ecto-sp8_S_contig106530.1016.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp MVKAVRAEGQPKRPMSTYFLWMNEVGRAGVKKKNPEASITEVSKKCGEEWback to top mRNA from alignment at Ecto-sp8_S_contig106530:62..376+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig106530.1016.1 ID=mRNA_Ecto-sp8_S_contig106530.1016.1|Name=mRNA_Ecto-sp8_S_contig106530.1016.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106530:62..376+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106530:62..376+ >mRNA_Ecto-sp8_S_contig106530.1016.1 ID=mRNA_Ecto-sp8_S_contig106530.1016.1|Name=mRNA_Ecto-sp8_S_contig106530.1016.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106530:62..376+ (Ectocarpus species8 EcLAC_412)back to top |