prot_Ecto-sp8_S_contig10624.983.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10624.983.1
Unique Nameprot_Ecto-sp8_S_contig10624.983.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length144
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10624.983.1 vs. uniprot
Match: D8LE98_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE98_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 3.990e-53
Identity = 115/127 (90.55%), Postives = 116/127 (91.34%), Query Frame = 0 
Query:    1 MLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQLIKFSKEQNLESIEFKMCPVLPVLQEAPVRRRRGGGRGGXXXXXXXXXX-----YRGNRSSYG 122
            MLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQL+KFSKEQNLESIEFKMCPVLPVLQEAP   R GGGR  XXXXXXXXXX     YRGNRSSYG
Sbjct:  706 MLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQLVKFSKEQNLESIEFKMCPVLPVLQEAP-GGRFGGGRXXXXXXXXXXXXXXXXXYRGNRSSYG 831
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BLAST of mRNA_Ecto-sp8_S_contig10624.983.1 vs. uniprot
Match: A0A7S3ZWQ0_9STRA (RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWQ0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.500e-14
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 0 
Query:    1 MLTGEPDKVTVQMVAPRQLTSGDVMFAVGKL--------GRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQLIKFSKEQNLESIEFKMCPVLPVLQEAPVRRRRGGGRG 102
            +LTGE D+ T+ M APR L + DV++AV KL        G        VG + + K+P+ AVFD+ +  A +L+ F +EQN     F++C VLP LQ    R   GGG G
Sbjct:  587 VLTGEADRTTLLMSAPRPLKTSDVVYAVSKLLERVPKQEGATPNDNDRVGAVRVCKEPSQAVFDVRSTTAQRLLAFCEEQNFNKFTFEVCEVLPQLQPQQRRDFNGGGGG 696
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10624.983.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE98_ECTSI3.990e-5390.55RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S3ZWQ0_9STRA2.500e-1440.00RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012562GUCTPFAMPF08152GUCTcoord: 1..89
e-value: 7.4E-11
score: 42.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10624contigEcto-sp8_S_contig10624:36..1070 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10624.983.1mRNA_Ecto-sp8_S_contig10624.983.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10624 24..1070 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10624.983.1 ID=prot_Ecto-sp8_S_contig10624.983.1|Name=mRNA_Ecto-sp8_S_contig10624.983.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
MLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDP
TTAVFDMSTEAADQLIKFSKEQNLESIEFKMCPVLPVLQEAPVRRRRGGG
RGGRGRGRGGGGGYRGNRSSYGGGRGGSYGGGGGGGYRGGGDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012562GUCT