mRNA_Ecto-sp8_S_contig10624.983.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10624.983.1
Unique NamemRNA_Ecto-sp8_S_contig10624.983.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10624.983.1 vs. uniprot
Match: D8LE98_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE98_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.030e-54
Identity = 118/130 (90.77%), Postives = 119/130 (91.54%), Query Frame = 1 
Query:    4 RRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQLIKFSKEQNLESIEFKMCPVLPVLQEAPVRRRRGGGRGGXXXXXXXXXX-----YRGNRSSYG 378
            RRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQL+KFSKEQNLESIEFKMCPVLPVLQEAP   R GGGR  XXXXXXXXXX     YRGNRSSYG
Sbjct:  703 RRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQLVKFSKEQNLESIEFKMCPVLPVLQEAP-GGRFGGGRXXXXXXXXXXXXXXXXXYRGNRSSYG 831
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BLAST of mRNA_Ecto-sp8_S_contig10624.983.1 vs. uniprot
Match: A0A836CKS6_9STRA (RNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.050e-21
Identity = 62/120 (51.67%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:    1 QRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGF-EPMVGRIAIAKDPTTAVFDMSTEAADQLIKFSKEQNLESIEFKMCPVLPVL--QEAPVRRRRG----------GGRGG 321
            Q+RS+LTGEPD  TVQMVA + +T+GDV FAV KL RA G   P +G+IAI KD  TAVFDM+  AA  LI  + +Q L++I+F +C  LP L  QE   R  RG          GGRGG
Sbjct:  501 QQRSILTGEPDMATVQMVAHQPMTTGDVTFAVNKLARAGGGPSPNIGKIAIGKDAHTAVFDMTQAAAAALIDVANDQELKAIKFTLCTELPELSTQEYGGRPSRGRFDRGGDRGYGGRGG 620
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BLAST of mRNA_Ecto-sp8_S_contig10624.983.1 vs. uniprot
Match: A0A7S3ZWQ0_9STRA (RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWQ0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.400e-15
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:    7 RSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKL--------GRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQLIKFSKEQNLESIEFKMCPVLPVLQEAPVRRRRGGGRG 318
            RS+LTGE D+ T+ M APR L + DV++AV KL        G        VG + + K+P+ AVFD+ +  A +L+ F +EQN     F++C VLP LQ    R   GGG G
Sbjct:  585 RSVLTGEADRTTLLMSAPRPLKTSDVVYAVSKLLERVPKQEGATPNDNDRVGAVRVCKEPSQAVFDVRSTTAQRLLAFCEEQNFNKFTFEVCEVLPQLQPQQRRDFNGGGGG 696
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10624.983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LE98_ECTSI1.030e-5490.77RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A836CKS6_9STRA7.050e-2151.67RNA helicase (Fragment) n=1 Tax=Tribonema minus Ta... [more]
A0A7S3ZWQ0_9STRA2.400e-1541.07RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10624contigEcto-sp8_S_contig10624:24..1070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score190.3
Seed ortholog evalue6.4e-46
Seed eggNOG ortholog2880.D8LE98
Model size444
KEGG koko:K16911
KEGG Pathwayko01110,map01110
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
EC3.6.4.13
Cds size432
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.1228478-UTR-Ecto-sp8_S_contig10624:23..351681143160.1228478-UTR-Ecto-sp8_S_contig10624:23..35Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10624 24..35 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.1336305-CDS-Ecto-sp8_S_contig10624:35..3211681143160.1336305-CDS-Ecto-sp8_S_contig10624:35..321Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10624 36..321 +
1681143160.1428938-CDS-Ecto-sp8_S_contig10624:924..10701681143160.1428938-CDS-Ecto-sp8_S_contig10624:924..1070Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10624 925..1070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10624.983.1prot_Ecto-sp8_S_contig10624.983.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10624 36..1070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10624.983.1

>prot_Ecto-sp8_S_contig10624.983.1 ID=prot_Ecto-sp8_S_contig10624.983.1|Name=mRNA_Ecto-sp8_S_contig10624.983.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
MLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDP
TTAVFDMSTEAADQLIKFSKEQNLESIEFKMCPVLPVLQEAPVRRRRGGG
RGGRGRGRGGGGGYRGNRSSYGGGRGGSYGGGGGGGYRGGGDR*
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mRNA from alignment at Ecto-sp8_S_contig10624:24..1070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10624.983.1 ID=mRNA_Ecto-sp8_S_contig10624.983.1|Name=mRNA_Ecto-sp8_S_contig10624.983.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1047bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10624:24..1070+ (Ectocarpus species8 EcLAC_412)
CAGAGGAGATCCATGTTGACGGGAGAGCCAGACAAGGTCACCGTCCAGAT
GGTGGCGCCCCGCCAGCTCACCTCCGGCGACGTCATGTTCGCGGTGGGCA
AGCTAGGCCGCGCGGCGGGCTTCGAGCCGATGGTTGGCAGGATCGCCATC
GCCAAGGACCCCACGACGGCGGTGTTCGACATGTCCACTGAGGCCGCCGA
CCAGCTGATCAAGTTCAGCAAGGAGCAAAACTTGGAGAGCATCGAGTTCA
AGATGTGCCCCGTGCTGCCCGTGCTTCAGGAAGCTCCGGTAAGGAGGCGT
GTTTTGCGTCAGTTTTGAGGGCAGGTTTCTTTTTTTTTTCCCCGTGGTGT
TGTACGGCTGTGTGCTCGAGGATATACGGGGCAGCAGTATTTCGGGCAAT
CACGCGTCGCCTCTCACCACAGAAGTCAGTTTTGGTCTTCCAGCAGTGCG
AACAGCAGTACGTCCCGAATGGGATGCCCTCGTTCCTGGGAGGTTCTTCT
TTTTTAGGTCGCCATGGCGATATCAGACATGTTTCAACGCCATGCCTCCG
CTATCGGCTACGTCCTCAACTGGTCTCTCGATCGTGGATTCGGCGCCGAA
AGCCTAATTTGACAAAAATAAAAAAAACGTGCTTGACGTTAGTGCTTACC
TGTTGCTTGTTTCTATAGTACTCAAGGACCAACCTTTGGTATCTACGTAT
CCCTACAACACCAACGCCTGTCGTCTTGCTGTGAAGTTGCGGACGGTCTT
CGCCAGCAAAATTGTCGGCAGACGAGATGCGTTTTCACTTGTTTCTTTCC
TTTTGCACCCAACACCTGTCCCGAACATTTGTTTCTAATCCTTTCGCAAC
CCGACGCTTGTCCTGAACATGAACATGAACAGGGAGGACGGTTTGGTGGA
GGTCGGGGAGGCGGCCGCGGCGGGCGTGGACGCGGACGAGGCGGCGGCGG
CGGTTACAGGGGCAACCGATCATCGTACGGCGGTGGAAGGGGTGGATCGT
ACGGTGGCGGAGGCGGAGGGGGGTACCGCGGGGGCGGAGACAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10624:24..1070+

>mRNA_Ecto-sp8_S_contig10624.983.1 ID=mRNA_Ecto-sp8_S_contig10624.983.1|Name=mRNA_Ecto-sp8_S_contig10624.983.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10624:24..1070+ (Ectocarpus species8 EcLAC_412)
ATGTTGACGGGAGAGCCAGACAAGGTCACCGTCCAGATGGTGGCGCCCCG
CCAGCTCACCTCCGGCGACGTCATGTTCGCGGTGGGCAAGCTAGGCCGCG
CGGCGGGCTTCGAGCCGATGGTTGGCAGGATCGCCATCGCCAAGGACCCC
ACGACGGCGGTGTTCGACATGTCCACTGAGGCCGCCGACCAGCTGATCAA
GTTCAGCAAGGAGCAAAACTTGGAGAGCATCGAGTTCAAGATGTGCCCCG
TGCTGCCCGTGCTTCAGGAAGCTCCGGTAAGGAGGCGTCGGGGAGGCGGC
CGCGGCGGGCGTGGACGCGGACGAGGCGGCGGCGGCGGTTACAGGGGCAA
CCGATCATCGTACGGCGGTGGAAGGGGTGGATCGTACGGTGGCGGAGGCG
GAGGGGGGTACCGCGGGGGCGGAGACAGGTAA
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