prot_Ecto-sp8_S_contig10572.900.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10572.900.1
Unique Nameprot_Ecto-sp8_S_contig10572.900.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length348
Homology
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 524 bits (1350), Expect = 5.390e-185
Identity = 305/349 (87.39%), Postives = 309/349 (88.54%), Query Frame = 0
Query:    2 VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVLLRXXXXXXXXXXXXXXXXXXXX---ALSLFTARVLSLRPAKGSYGGGGGSFKAAEAGAGRVGGNGAGGCGESRPYFFVVTDDGIHDVPAAAALGEGEGWEGR 347
            VPAGSG SKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGG+G      HAS SR QQLQSDLEDVLIGCLRRLRVVRP GLFELLAAIEVL+FELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKN   L                 GDAATEHREYLPQIWQRAVTFRVLL+ XXXXXXXXXXXXXXXXXXX   ALSLFTARVLSLR AKG+YGGGGGSFKAA AGAGRVG  GAGG GESRPYFFVVTDDGIHDVPAAA LGEGEGWEGR
Sbjct:   34 VPAGSGSSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGVGGGGGTIHASPSRLQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNGKDL-----------------GDAATEHREYLPQIWQRAVTFRVLLQRXXXXXXXXXXXXXXXXXXXXXXALSLFTARVLSLRLAKGNYGGGGGSFKAAAAGAGRVGRYGAGGDGESRPYFFVVTDDGIHDVPAAATLGEGEGWEGR 365          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 1.840e-103
Identity = 164/167 (98.20%), Postives = 166/167 (99.40%), Query Frame = 0
Query:    2 VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRPAVVVVDGMGSFFWQDKM 168
            VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRP GLFELLAAIEVL+FELGHRPAVVVVDGMGSFFWQDK+
Sbjct:   34 VPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKV 200          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: UPI001CF6073B (DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnus TaxID=8234 RepID=UPI001CF6073B)

HSP 1 Score: 107 bits (268), Expect = 2.910e-23
Identity = 79/243 (32.51%), Postives = 122/243 (50.21%), Query Frame = 0
Query:   12 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVL 248
            +D G   G+VVELYG  G+GK+E+L +++ RCV+P   GG E   VF D D  L +LRL  +L  +++  T     ++ GG G       A S+    + SD E  L  CL RL VV  +   +LL  +  L+  L  RP  A+V++D + +F+W D+     GG +++ Q       A+ L RL  +  + +FA  +A+                +S   ++   R YL + WQR VT R+L
Sbjct:   28 EDGGPDHGEVVELYGTEGTGKTELLYHLLCRCVLPVAAGGLEVDVVFVDTDYSLDMLRLVSILDSRLNAGTHTHAVASEGGSGP------ALSTSSPSVASD-EAALRSCLARLLVVHCSSSSQLLLTLHFLETSLSSRPGLALVLIDSISAFYWLDRCE---GGASIAKQEEKLSKCAELLGRLLRDYRITVFATCHAI---------RRSYSGPSSSSASSESDRPYLCRPWQRLVTHRLL 251          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: UPI001F07E576 (DNA repair protein XRCC2 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07E576)

HSP 1 Score: 100 bits (249), Expect = 1.800e-20
Identity = 75/256 (29.30%), Postives = 125/256 (48.83%), Query Frame = 0
Query:   12 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQ-SDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIV----AKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXN-----------SRGDAATEHREYLPQIWQRAVTFRVLL 249
            +D G   GDVVEL+G  G+GK+E+L +++ RC++P   GG     VF D D    +LRL  +L+ +++            G G       +S  + Q    SD E  +  CL RL VV  +   +LL  +  L+  +  RP  +++++D + +F+W D+   S GG++V+ Q +     ++ L RL  +  + +FA+ +A+    GN          +           S   A+   R+YL + WQR VT R+LL
Sbjct:   28 EDGGPNYGDVVELHGTEGTGKTELLYHLLVRCLLPEDAGGLGVEVVFLDTDHHFDMLRLVTVLEHRLAQTI---------GAGSTEEGCESSGGQGQATATSDPETRVRACLSRLSVVHCSSSAQLLLTLHFLETSMCSRPKLSLLIIDSISAFYWMDR---SGGGDSVAKQEVTLRKCSELLARLLRDYRISVFASTHAIMRNYGNWSSDRLGESSDAASSLPSWRKWSSAQASDYDRQYLCKPWQRLVTHRLLL 271          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: A0A6P8V3Q7_GYMAC (DNA repair protein XRCC2 isoform X1 n=6 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8V3Q7_GYMAC)

HSP 1 Score: 99.4 bits (246), Expect = 3.840e-20
Identity = 78/242 (32.23%), Postives = 121/242 (50.00%), Query Frame = 0
Query:   13 DKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVL 248
            D G   G+VVELYGP G+GK+E+L ++++RC++P   GG E   VF D D  L +LRL  +L  +++  T  Q +S               S+R        E++L  CL RL VV  +   +LL  +  L+  L  RP  A++++D + +F+W D+     GG +V+ Q       A+ L RL  +  + +FA  +A+   R N         X     +  + R YL + WQR VT R+L
Sbjct:   29 DGGPEPGEVVELYGPEGTGKTELLYHLLSRCLLPLSAGGLEVDVVFMDTDYSLDMLRLVSILDSRLNAGTHQQRRSIQ------------VSARSSSSSGSDEELLGSCLSRLLVVHCSSSSQLLLTLHFLETTLTSRPRVALLLIDSISAFYWPDRCE---GGTSVTKQEEKLSKCAELLGRLLRDYRITVFATCHAI---RRNYSGPSSFSSXXXXXXSDID-RPYLCRPWQRLVTHRLL 251          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: A0A6P4ZTH1_BRABE (DNA repair protein XRCC2-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZTH1_BRABE)

HSP 1 Score: 98.6 bits (244), Expect = 5.060e-20
Identity = 69/241 (28.63%), Postives = 108/241 (44.81%), Query Frame = 0
Query:   13 DKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQ-SCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAA----TEHREYLPQIWQRAVTFR 246
            D G   GD VE YGP G+ K+E+L+++ ARC++PA LGG E   VF D D    ILRL  +L+G++      +VK                                 CLRRL +VR     +L+  +  L+  L   P  A+++VD + +F+W D+    S  G+ ++ +  V   L R   +  +VL A K A+F  +            + + +       EH EY+   WQ  + +R
Sbjct:   32 DAGPKPGDAVEFYGPEGTAKTEMLLHLTARCILPASLGGLEAGVVFIDTDFHFDILRLVAILEGRLDTTDEDRVKD--------------------------------CLRRLYIVRCNSSEQLVITLHSLEHILASTPDVALLIVDSISAFYWLDRSTDDSISGQELNQRRCV-DVLSRYLTDYGIVLIATKQAIFGQKSRKSQQKEDTTLSPKVEKTKVENVEHYEYMCHAWQNMIKYR 239          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: UPI001BEC6CAA (DNA repair protein XRCC2 isoform X1 n=2 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BEC6CAA)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-19
Identity = 80/244 (32.79%), Postives = 117/244 (47.95%), Query Frame = 0
Query:   12 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEH-REYLPQIWQRAVTFRVL 248
            +D G   G+VVELYG  G+GK+E+L +++ RCV+P   GG E   VF D D  L +LRL  +L  ++  N      S S G                   SD E VL  CL RL VV      +LL  +  L+  L  RP  A++++D + +F+W D+     GG +++ Q    G  A+ L RL  +  + +FA  +A+                +S     +EH R YL + WQR VT R+L
Sbjct:   42 EDGGPDHGEVVELYGAEGTGKTELLYHLLCRCVLPVATGGLEVEVVFIDTDYSLDMLRLVSILDSRL--NAARSTGSPSAG-------------------SD-EVVLRSCLSRLLVVHCPSSSQLLLTLHFLETSLSSRPGLALLLIDSISAFYWLDRCE---GGASIAKQEEKLGKCAELLGRLLRDYRITVFATCHAI--------RRSYSGPSSSXXXXXSEHDRPYLCRPWQRLVTHRLL 252          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: B3RU80_TRIAD (RECA_2 domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RU80_TRIAD)

HSP 1 Score: 96.3 bits (238), Expect = 3.900e-19
Identity = 62/252 (24.60%), Postives = 117/252 (46.43%), Query Frame = 0
Query:    9 SKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMP-----AWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXN----SRGDAATEHREYLPQIWQRAVTFRVLL 249
            SK +  G+  GDVVE YG  G GK+E+L++++ +C+MP       + G     V+ D D   ++LRL  +L+ +                        A       +    E+ +  CL R  ++R   + +L+ ++ +L++ +   P   ++++DG+GSF+WQDK + S G + +       K +  L  E  +++ A K+A+     N          N    +     ++H EY+P +W++ V +R +L
Sbjct:   28 SKLQFNGLTCGDVVEFYGSEGCGKTEMLLHLMIKCIMPDNFRGIAMNGRSMSVVYIDCDYHFNLLRLMSILEQRYCK---------------------ACQGSNATMVKHSEEFIRKCLERFYIIRCDTIHQLITSLHLLEYSISSNPDIGIMLIDGIGSFYWQDKFSSSSGVDQL------CKIVKYLCDEHNLIVLATKSAIRKQFENSRLANKSRLRNDIASNYNSTHSKHMEYMPNVWRKLVKYRYIL 252          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: A0A3Q3MX37_9TELE (X-ray repair complementing defective repair in Chinese hamster cells 2 n=4 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A3Q3MX37_9TELE)

HSP 1 Score: 95.9 bits (237), Expect = 4.180e-19
Identity = 72/242 (29.75%), Postives = 115/242 (47.52%), Query Frame = 0
Query:   13 DKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVL 248
            D G   GDVVELYG  G+GK+E+L +++ RCV+P   GG E    F D D  L + RL  +L G++S++                   H + S         + VL  CL RL V+  +   +LL  +  L+  +  RP  A++++D + +F+W D+     GG +V+ Q    G  A+ L RL  +  + + A  +A+                 S   ++  +R YL ++WQR VT R+L
Sbjct:   35 DGGPDHGDVVELYGTEGTGKTELLYHLLCRCVLPQDAGGLEAEVAFVDTDYSLDMFRLVSILDGRLSSSA------------------HLAGSG--------DSVLRSCLSRLLVLHCSSSSQLLLTLHSLETSMALRPGLALLLIDSISAFYWLDRCG---GGASVTKQEELLGKCAELLGRLLRDYRITIVATCHAI----------RRTSCGPSSSSSSDPNRPYLCRLWQRLVTHRLL 237          
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Match: UPI00117BE5CE (DNA repair protein XRCC2 isoform X1 n=4 Tax=Sphaeramia orbicularis TaxID=375764 RepID=UPI00117BE5CE)

HSP 1 Score: 95.9 bits (237), Expect = 7.000e-19
Identity = 73/243 (30.04%), Postives = 116/243 (47.74%), Query Frame = 0
Query:   12 KDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHRP--AVVVVDGMGSFFWQDKMAQSCGGEAVSMQ----GIVAKALVRLTMERPVVLFAAKNALFLPRGNGXXXXXXXXXNSRGDAATEHREYLPQIWQRAVTFRVL 248
            KD G   G+VVEL+GP G+GK+EVL ++++RC++P   GG E   VF D D  L +LRL  +L  K++                       +S  P   Q  L      CL RL VV  +   +LL  +  L+  L  RP  A++++D + +F+W D+   S GG +V+ Q       ++ L RL  +  + +FA  +A+                +S   ++   R +L + WQR VT R++
Sbjct:   28 KDGGPNHGEVVELFGPEGTGKTEVLYHLLSRCILPVAAGGLEVDVVFVDTDYSLDMLRLVSILDNKLNPALC------------------GASPPPASDQGTLHS----CLSRLLVVHCSSSSQLLLTLHFLETTLSSRPGLALLLIDSVSAFYWLDR---SEGGASVAKQEEKLSKCSELLGRLLRDYRITMFATCHAIRRSHAE--------PSSSSSSSSNADRPFLCRSWQRLVTHRLI 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10572.900.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE5.390e-18587.39Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI1.840e-10398.20Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001CF6073B2.910e-2332.51DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnu... [more]
UPI001F07E5761.800e-2029.30DNA repair protein XRCC2 n=1 Tax=Hypomesus transpa... [more]
A0A6P8V3Q7_GYMAC3.840e-2032.23DNA repair protein XRCC2 isoform X1 n=6 Tax=Nototh... [more]
A0A6P4ZTH1_BRABE5.060e-2028.63DNA repair protein XRCC2-like n=1 Tax=Branchiostom... [more]
UPI001BEC6CAA1.380e-1932.79DNA repair protein XRCC2 isoform X1 n=2 Tax=Chelmo... [more]
B3RU80_TRIAD3.900e-1924.60RECA_2 domain-containing protein n=2 Tax=Trichopla... [more]
A0A3Q3MX37_9TELE4.180e-1929.75X-ray repair complementing defective repair in Chi... [more]
UPI00117BE5CE7.000e-1930.04DNA repair protein XRCC2 isoform X1 n=4 Tax=Sphaer... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 14..73
e-value: 8.1E-5
score: 22.0
NoneNo IPR availableGENE3D3.40.50.300coord: 8..280
e-value: 7.6E-28
score: 99.7
IPR030547DNA repair protein XRCC2PANTHERPTHR46644FAMILY NOT NAMEDcoord: 18..256
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10572contigEcto-sp8_S_contig10572:2904..6166 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10572.900.1mRNA_Ecto-sp8_S_contig10572.900.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10572 2904..6166 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10572.900.1 ID=prot_Ecto-sp8_S_contig10572.900.1|Name=mRNA_Ecto-sp8_S_contig10572.900.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=348bp
KVPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLG
GEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGGGGGTT
HASSSRPQQLQSDLEDVLIGCLRRLRVVRPTGLFELLAAIEVLKFELGHR
PAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFA
AKNALFLPRGNGGNNNSSSSSNSRGDAATEHREYLPQIWQRAVTFRVLLR
RRQKRPPSPRPPPQSSGGGGALSLFTARVLSLRPAKGSYGGGGGSFKAAE
AGAGRVGGNGAGGCGESRPYFFVVTDDGIHDVPAAAALGEGEGWEGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR030547XRCC2
IPR027417P-loop_NTPase